Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,267,796 – 14,267,892 |
Length | 96 |
Max. P | 0.634264 |
Location | 14,267,796 – 14,267,892 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.09 |
Mean single sequence MFE | -24.45 |
Consensus MFE | -15.50 |
Energy contribution | -15.67 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.10 |
Mean z-score | -1.47 |
Structure conservation index | 0.63 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14267796 96 + 22407834 UGGCCAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGCGAGUCGGCGA------CGUCGACCAAAGCCCGGCAUUAAACUAACAA------ ..(((.....((((((((.((...((.....)).)).))))))))(((((.(.....).))))).------...............))).............------ ( -20.00) >DroPse_CAF1 126541 89 + 1 UGGCUAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGGCAUUGACGCCGUCUGCUCGGCGGCGA------CGACAACC---GCCUGA----GCAACAACAA------ (((((((((.......)))))).))).(((.......(((......)))((.((((((((((...------......))---))).))----))))))))..------ ( -28.40) >DroEre_CAF1 101670 102 + 1 UGGCCAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGCGAGUCGGCGA------CGUCGACCAAAGCCCGGCAUUAAACUAACAACCACAA (((.......((((((((.((...((.....)).)).)))))))).((((...((..((((((..------.))))))....)).)))).............)))... ( -21.20) >DroYak_CAF1 91181 102 + 1 AGGCCAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGCGAGUCGGCGACGCAGACGUCGACCAAAGCUCGGCAUUAAACCAACAA------ ..(((.....((((((((.((...((.....)).)).))))))))((.((((((((.(....)..)))))))).))..........))).............------ ( -26.10) >DroAna_CAF1 102072 81 + 1 UGGCUAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGUGAGGCGGCGG------CGACCGCAAC----------------AACAA-----G (((((((((.......)))))).))).((((.....)))).(((.(((((((.....)))))))(------(....))...----------------..)))-----. ( -22.60) >DroPer_CAF1 132228 89 + 1 UGGCUAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGGCAUUGACGCCGUCUGCUCGGCGGCGA------CGACAACC---GCCAGA----GCAACAACAA------ (((((((((.......)))))).))).(((.......(((......)))((.((((((((((...------......))---))).))----))))))))..------ ( -28.40) >consensus UGGCCAUAAAUUAAUGUUAUAGACCAAGUUUUGAUAAGACAUUGACGCCGUCUGCGAGGCGGCGA______CGACGACCAA_GCCCGG____AAACCAACAA______ .(((......((((((((.((...((.....)).)).))))))))(((((.(.....).)))))..................)))....................... (-15.50 = -15.67 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:10 2006