Locus 4962

Sequence ID 2L_DroMel_CAF1
Location 14,245,034 – 14,245,135
Length 101
Max. P 0.855291
window7872

overview

Window 2

Location 14,245,034 – 14,245,135
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.28
Mean single sequence MFE -27.96
Consensus MFE -25.14
Energy contribution -25.14
Covariance contribution 0.00
Combinations/Pair 1.22
Mean z-score -1.37
Structure conservation index 0.90
SVM decision value 0.81
SVM RNA-class probability 0.855291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14245034 101 - 22407834
GAUUUCCACUUGCACUUGCCUCAUCAGUUUCCCUUGCUUGGGCGCGAAGAAAAAACAUUUUCUUUGUUGCCGAUGGCCAAGGUGAACAAAAGGGCUGUUAC
.................((((.....(((..((((((((.(((((((((((((....))))))))).)))).).)).)))))..)))....))))...... ( -30.60)
>DroSec_CAF1 77672 101 - 1
GAUUUCCACUUGCACUUGCCUCAUCAGUUUCCCUUGUUUAGGCGCGAAGGAAAAACAUUUUCUUUGUUGCCGAUGGCCAAGGUGAACAAAAAGGCUGUUAC
.................((((.....(((..(((((((..(((((((((((((....))))))))).))))...)).)))))..)))....))))...... ( -28.60)
>DroSim_CAF1 69900 101 - 1
GAUUUCCACUUGCACUUGCCUCAUCAGUUUCCCUUGUUUAGGCGCGAAGGAAAAACAUUUUCUUUGUUGCCGAUGGCCAAGGUGAACAAAAAGGCUGUUAC
.................((((.....(((..(((((((..(((((((((((((....))))))))).))))...)).)))))..)))....))))...... ( -28.60)
>DroEre_CAF1 78772 101 - 1
GAUUUCCACUUGCACUUGCCUCGUCAGUUUCCCUUGUUUAGGCGCGAAGAAAACCCAUUUUCUUUGUUGCUGAUUGCCAAGGUGGACAAAAGGGCUGUUGC
...........(((...((((.....(((..(((((....(((((((((((((....))))))))).))))......)))))..)))....))))...))) ( -29.30)
>DroYak_CAF1 67176 101 - 1
GAUUUCCACUUGCACUUGCCUCGUCAGUUUCCCUUGUUUAGAGGCGAGGAAGAAACAUUUUCAUUGUUGCUGAUUGCCAAGGUGAACAAAAGAGCUGUUAC
......((((((((((((((((..(((......)))....))))))))..((.((((.......)))).))...)))..)))))((((.......)))).. ( -22.70)
>consensus
GAUUUCCACUUGCACUUGCCUCAUCAGUUUCCCUUGUUUAGGCGCGAAGAAAAAACAUUUUCUUUGUUGCCGAUGGCCAAGGUGAACAAAAGGGCUGUUAC
.................((((.....(((..(((((((..(((((((((((((....))))))))).))))...)).)))))..)))....))))...... (-25.14 = -25.14 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:05 2006