Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,240,229 – 14,240,372 |
Length | 143 |
Max. P | 0.910806 |
Location | 14,240,229 – 14,240,341 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.59 |
Mean single sequence MFE | -34.63 |
Consensus MFE | -29.48 |
Energy contribution | -29.27 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.12 |
Mean z-score | -2.00 |
Structure conservation index | 0.85 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14240229 112 + 22407834 GCAGCGCCAGCACCUCAUCUGGAAUUAAUGAGCUGCUCCUACUGAUGCAUCAUCAGUACAUCGGUAGCCAAA-GGGGGAAGUCUGCCACAUCCCAGAUAAA-GUAUGUAUAUGU (((((....)).....((((((......((.((((((..((((((((...))))))))....))))))))..-((.((....)).)).....))))))...-...)))...... ( -32.30) >DroSec_CAF1 72923 113 + 1 GCAGCGC-AGCACCUCAUCUGGAAUUAAUGAGCUGCUACUACUGAUGCAUCAUCAGUACAUCAGUAGCCAAACGGAGGGAGUCUGCUCCAUCCCAGCUAUAUGUAUGUAUGUGU ...((((-((((...(((.(((......((.((((((..((((((((...))))))))....))))))))...(((.((((....)))).)))...))).)))..))).))))) ( -35.30) >DroSim_CAF1 65157 108 + 1 GCAGCGC-AGCACCUCAUCUGGAAUUAAUGAGCUGCUACUACUGAUGCAUCAUCAGUACAUCAGUAGCCAAA-GGGGGGAGUCUGCUCCAUCCCAGAUAUAU----GUAUGUGU ...((((-((((....((((........((.((((((..((((((((...))))))))....))))))))..-((((((((....)))).))))))))...)----)).))))) ( -36.30) >consensus GCAGCGC_AGCACCUCAUCUGGAAUUAAUGAGCUGCUACUACUGAUGCAUCAUCAGUACAUCAGUAGCCAAA_GGGGGGAGUCUGCUCCAUCCCAGAUAUAUGUAUGUAUGUGU (((((....)).....((((((......((.((((((..((((((((...))))))))....))))))))...((((.(....).))))...)))))).............))) (-29.48 = -29.27 + -0.22)
Location | 14,240,229 – 14,240,341 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 90.59 |
Mean single sequence MFE | -39.83 |
Consensus MFE | -32.32 |
Energy contribution | -33.10 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -3.08 |
Structure conservation index | 0.81 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14240229 112 - 22407834 ACAUAUACAUAC-UUUAUCUGGGAUGUGGCAGACUUCCCCC-UUUGGCUACCGAUGUACUGAUGAUGCAUCAGUAGGAGCAGCUCAUUAAUUCCAGAUGAGGUGCUGGCGCUGC .......(((((-(((((((((((((((((.(.((((....-.((((...))))..((((((((...))))))))))))).)).)))..))))))))))))))).))....... ( -35.70) >DroSec_CAF1 72923 113 - 1 ACACAUACAUACAUAUAGCUGGGAUGGAGCAGACUCCCUCCGUUUGGCUACUGAUGUACUGAUGAUGCAUCAGUAGUAGCAGCUCAUUAAUUCCAGAUGAGGUGCU-GCGCUGC ...............((((..(((.((((....)))).))).......(((((((((((....).))))))))))((((((.((((((.......)))))).))))-)))))). ( -42.50) >DroSim_CAF1 65157 108 - 1 ACACAUAC----AUAUAUCUGGGAUGGAGCAGACUCCCCCC-UUUGGCUACUGAUGUACUGAUGAUGCAUCAGUAGUAGCAGCUCAUUAAUUCCAGAUGAGGUGCU-GCGCUGC ........----........(((..((((....)))).)))-...((((((((((((((....).))))))))))((((((.((((((.......)))))).))))-))))).. ( -41.30) >consensus ACACAUACAUACAUAUAUCUGGGAUGGAGCAGACUCCCCCC_UUUGGCUACUGAUGUACUGAUGAUGCAUCAGUAGUAGCAGCUCAUUAAUUCCAGAUGAGGUGCU_GCGCUGC ...............((((((((((.((((......((.......))((((((((((((....).))))))))))).....))))....)))))))))).((((....)))).. (-32.32 = -33.10 + 0.78)
Location | 14,240,266 – 14,240,372 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -31.20 |
Consensus MFE | -25.04 |
Energy contribution | -25.60 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.94 |
Structure conservation index | 0.80 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14240266 106 + 22407834 CCUACUGAUGCAUCAUCAGUACAUCGGUAGCCAAA-GGGGGAAGUCUGCCACAUCCCAGAUAAA-GUAUGUAUAUGUAUGUACAUCUUACGCCUUUCGACGUGGCUCC ..((((((((...))))))))....((.(((((..-(..((..(((((........))))).((-(.(((((((....))))))))))....))..)....))))))) ( -31.20) >DroSec_CAF1 72959 108 + 1 ACUACUGAUGCAUCAUCAGUACAUCAGUAGCCAAACGGAGGGAGUCUGCUCCAUCCCAGCUAUAUGUAUGUAUGUGUAUGUACAUCUUACGCCUUUCGAUGCGGCUCC .(((((((((.((.....)).)))))))))......(((.((((....)))).))).(((...(((((((((....)))))))))....(((........)))))).. ( -31.40) >DroSim_CAF1 65193 103 + 1 ACUACUGAUGCAUCAUCAGUACAUCAGUAGCCAAA-GGGGGGAGUCUGCUCCAUCCCAGAUAUAU----GUAUGUGUAUGUACAUCUUACGCCUUUCGAUGCGGCUCC .(((((((((.((.....)).))))))))).....-((((((((....)))).))))((((.(((----(((....)))))).))))...(((.........)))... ( -31.00) >consensus ACUACUGAUGCAUCAUCAGUACAUCAGUAGCCAAA_GGGGGGAGUCUGCUCCAUCCCAGAUAUAUGUAUGUAUGUGUAUGUACAUCUUACGCCUUUCGAUGCGGCUCC .(((((((((.((.....)).)))))))))......((((((((....)))).))))............(((.((((....))))..)))(((.........)))... (-25.04 = -25.60 + 0.56)
Location | 14,240,266 – 14,240,372 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -33.93 |
Consensus MFE | -26.03 |
Energy contribution | -25.27 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.19 |
Mean z-score | -2.09 |
Structure conservation index | 0.77 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14240266 106 - 22407834 GGAGCCACGUCGAAAGGCGUAAGAUGUACAUACAUAUACAUAC-UUUAUCUGGGAUGUGGCAGACUUCCCCC-UUUGGCUACCGAUGUACUGAUGAUGCAUCAGUAGG (((((((((((....)))))((((((((........))))).)-)).....((((.((.....)).))))..-...)))).))....((((((((...)))))))).. ( -34.50) >DroSec_CAF1 72959 108 - 1 GGAGCCGCAUCGAAAGGCGUAAGAUGUACAUACACAUACAUACAUAUAGCUGGGAUGGAGCAGACUCCCUCCGUUUGGCUACUGAUGUACUGAUGAUGCAUCAGUAGU ((((((((.((....)).(((.(((((......)))).).))).....)).))...((((....)))))))).....(((((((((((((....).)))))))))))) ( -34.60) >DroSim_CAF1 65193 103 - 1 GGAGCCGCAUCGAAAGGCGUAAGAUGUACAUACACAUAC----AUAUAUCUGGGAUGGAGCAGACUCCCCCC-UUUGGCUACUGAUGUACUGAUGAUGCAUCAGUAGU ...(((.........)))...(((((((..((....)).----.)))))))(((..((((....)))).)))-....(((((((((((((....).)))))))))))) ( -32.70) >consensus GGAGCCGCAUCGAAAGGCGUAAGAUGUACAUACACAUACAUACAUAUAUCUGGGAUGGAGCAGACUCCCCCC_UUUGGCUACUGAUGUACUGAUGAUGCAUCAGUAGU (((((((((((...........)))))........................(((..((((....)))).)))....)))).))....((((((((...)))))))).. (-26.03 = -25.27 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:04 2006