Locus 496

Sequence ID 2L_DroMel_CAF1
Location 1,485,317 – 1,485,411
Length 94
Max. P 0.548403
window791

overview

Window 1

Location 1,485,317 – 1,485,411
Length 94
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.44
Mean single sequence MFE -25.75
Consensus MFE -13.15
Energy contribution -13.98
Covariance contribution 0.83
Combinations/Pair 1.10
Mean z-score -1.99
Structure conservation index 0.51
SVM decision value 0.03
SVM RNA-class probability 0.548403
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1485317 94 - 22407834
UGAUUAAAUUGGCCGCAGGCAACCA-GCAGCCCGAUAUUAAAUCAAUAAAU-------ACAAAAAUGCCGGCAUGUGGGAAUUCCCGCAGCCCGCCGA--CCCU
(((((.(((.(((.((.(....)..-)).)))....))).)))))......-------........((.(((.((((((....))))))))).))...--.... ( -28.60)
>DroPse_CAF1 140476 102 - 1
UGAUUAAAUUGGCCGCAGGCGGGCAGGCAGCCAGAUAUUAAAUCAAUAAAUACGGAAUACGAAAAUGCCUGAAUGUGGGAG--CCUGCAUCCAUUCCAUCCACU
.(((.....(((..((((((...((((((....(((.....)))........((.....))....)))))).........)--)))))..)))....))).... ( -25.50)
>DroEre_CAF1 109013 94 - 1
UGAUUAAAUUGGCCGCAGGCAACCA-GCAGCCCGAUAUUAAAUCAAUAAAU-------ACAAAAAUGCCGGCAUGUGGGAAUCCCCGCAGCCCGCAGA--CCCU
(((((.(((.(((.((.(....)..-)).)))....))).)))))......-------.......(((.(((.((((((....))))))))).)))..--.... ( -29.90)
>DroYak_CAF1 106239 94 - 1
UGAUUAAAUUGGCCGCAGGCAGCCA-GCAGCCCGAUAUUAAAUCAAUAAAU-------ACAAAAAUGCCGGCAUGUGGGAAUCCCCGCUGCCCGCAGA--CCCU
(((((.(((.(((.((.((...)).-)).)))....))).)))))......-------.......(((.((((.(((((....))))))))).)))..--.... ( -29.20)
>DroAna_CAF1 104289 77 - 1
UGAUUAAAUUGGCCGCAGGCAAGCA-GCAGCCCGAUAUUAAAUCAAUAAAU-------ACAAAAAUGCCUGCAUGUGGGAAUCCA-------------------
..............(((((((.((.-...))..(((.....))).......-------.......)))))))...(((....)))------------------- ( -15.80)
>DroPer_CAF1 138572 102 - 1
UGAUUAAAUUGGCCGCAGGCGGGCAGGCAGCCAGAUAUUAAAUCAAUAAAUACGGAAUACGAAAAUGCCUGAAUGUGGGAG--CCUGCAUCCAUUCCAUCCACU
.(((.....(((..((((((...((((((....(((.....)))........((.....))....)))))).........)--)))))..)))....))).... ( -25.50)
>consensus
UGAUUAAAUUGGCCGCAGGCAACCA_GCAGCCCGAUAUUAAAUCAAUAAAU_______ACAAAAAUGCCGGCAUGUGGGAAUCCCCGCAGCCCGCCGA__CCCU
(((((.(((.(((.((..........)).)))....))).)))))........................((..((((((....))))))..))........... (-13.15 = -13.98 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:31 2006