Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,236,007 – 14,236,097 |
Length | 90 |
Max. P | 0.998849 |
Location | 14,236,007 – 14,236,097 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -20.89 |
Energy contribution | -20.87 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.09 |
Mean z-score | -1.79 |
Structure conservation index | 0.97 |
SVM decision value | 3.25 |
SVM RNA-class probability | 0.998849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14236007 90 + 22407834 UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAA-AGGC ................(((((......(((.....)))((((((((((((((....)))..))))))))))).)))))........-.... ( -21.50) >DroSec_CAF1 68696 90 + 1 UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAA-AGGC ................(((((......(((.....)))((((((((((((((....)))..))))))))))).)))))........-.... ( -21.50) >DroSim_CAF1 60926 90 + 1 UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAA-AGGC ................(((((......(((.....)))((((((((((((((....)))..))))))))))).)))))........-.... ( -21.50) >DroEre_CAF1 69785 90 + 1 UGCAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCA-AAGACUUUCGACAAGAAAAAGGC ............(((..((((((.((.........))))))))..)))...(((((((....)))..-.....((((.....)))).)))) ( -20.50) >DroYak_CAF1 58130 90 + 1 UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGCCUAGGCCUGCCUUCGGGCCA-AAGACUUUCCACAAGAAAAAGGC ................(((((......(((.....)))..((((((((((((....)))..))))))-)))..)))))............. ( -19.60) >DroAna_CAF1 71154 91 + 1 UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGCCUAGGCCUGCCUUCGGGCCAAGAGACUUUCCACCAGAAAAAAGC ................(((((......(((.....)))((((((((((((((....)))..))))))))))).)))))............. ( -24.30) >consensus UACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAA_AGGC ................(((((......(((.....)))((((((((((((((....)))..)))))))))))))))).............. (-20.89 = -20.87 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:59 2006