Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,234,619 – 14,234,732 |
Length | 113 |
Max. P | 0.567915 |
Location | 14,234,619 – 14,234,732 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 98.82 |
Mean single sequence MFE | -14.10 |
Consensus MFE | -12.90 |
Energy contribution | -12.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.91 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14234619 113 - 22407834 CAAAAUAAACUCUCCAUGACAGCAGCUCUGUUAAGUUAACAUUGCUCAAGCAACAUUUUCUGAAAAGACAUAACACUCUCCACUCUCCAAUUUUUAUUCUCUCAGUUUGUUAU ...((((((((.....((((((.....)))))).((((...((((....)))).....(((....)))..)))).............................)))))))).. ( -16.50) >DroSec_CAF1 67360 113 - 1 UAAAAUAAACUCUCCAUGACAGCAGCUCUGUUAAGUUAACAUUGCUCAAGCAACAUUUUCUGAAAAAACAUAACACUCUCCACUCUCCAAUUUUUAUUCUCUCAGUUUGUUAU ...((((((((.....((((((.....)))))).((((...((((....))))((.....))........)))).............................)))))))).. ( -12.90) >DroSim_CAF1 59582 113 - 1 UAAAAUAAACUCUCCAUGACAGCAGCUCUGUUAAGUUAACAUUGCUCAAGCAACAUUUUCUGAAAAAACAUAACACUCUCCACUCUCCAAUUUUUAUUCUCUCAGUUUGUUAU ...((((((((.....((((((.....)))))).((((...((((....))))((.....))........)))).............................)))))))).. ( -12.90) >consensus UAAAAUAAACUCUCCAUGACAGCAGCUCUGUUAAGUUAACAUUGCUCAAGCAACAUUUUCUGAAAAAACAUAACACUCUCCACUCUCCAAUUUUUAUUCUCUCAGUUUGUUAU ...((((((((.....((((((.....)))))).((((...((((....))))((.....))........)))).............................)))))))).. (-12.90 = -12.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:58 2006