Locus 4957

Sequence ID	2L_DroMel_CAF1
Location	14,230,007 – 14,230,100
Length	93
Max. P	0.980074

overview

Window 3

Location	14,230,007 – 14,230,100
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	84.29
Mean single sequence MFE	-16.42
Consensus MFE	-14.36
Energy contribution	-14.56
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-2.25
Structure conservation index	0.87
SVM decision value	1.85
SVM RNA-class probability	0.980074
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14230007 93 - 22407834
GAAUCAGCUGAUUGUUGCUAUACGUAUAAAAACGUGCUAGUUAAUUCUGAAGCUGAUUCUCUCUCUAUUUCCUUACUUCUCUGCCUUCUUCUU
(((((((((....((((((((((((......))))).))).)))).....))))))))).................................. ( -21.10)
>DroSec_CAF1 62746 79 - 1
GAAUCAGCUGAUUGUUGCUAUACGUAUAAAAACGUGCUACUUAAUUCUAAUGCUGAUUCU----CUGUUUCCUUCCUUCUCUG----------
((((((((.((..((.((...((((......)))))).)).....))....)))))))).----...................---------- ( -15.80)
>DroSim_CAF1 54936 79 - 1
GAAUCAGCUGAUUGUUGCUAUACGUAUAAAAACGUGCUACUUAAUUCUAAUGCUGAUUCU----CUAUUUCCUUCCUUCUCUG----------
((((((((.((..((.((...((((......)))))).)).....))....)))))))).----...................---------- ( -15.80)
>DroEre_CAF1 63725 88 - 1
GAAUCAGCUGAUUGUUGCUAUACGUCUAAAAACGUGCUACUUAAUUCUAAUGCUGAUUCG--CUCUAGUUUCUUCCUACUCUGCCUU---CUU
((((((((.((..((.((...((((......)))))).)).....))....))))))))(--(...(((........)))..))...---... ( -17.70)
>DroYak_CAF1 51960 88 - 1
GAAUCAGCUGAUUGUUGCUAUACGUCUAAAAACGUGCUACUUAAUUCUUAUGCUGACUCC--CUGCAUUUUCUUCCUUCUCUGCCUA---UUU
((.((((((((..((((...(((((......))))).....))))..))).))))).)).--.........................---... ( -11.70)
>consensus
GAAUCAGCUGAUUGUUGCUAUACGUAUAAAAACGUGCUACUUAAUUCUAAUGCUGAUUCU__CUCUAUUUCCUUCCUUCUCUGCCU_____UU
((((((((.(((((..((...((((......))))))....))))).....)))))))).................................. (-14.36 = -14.56 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:57 2006