Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,226,217 – 14,226,319 |
Length | 102 |
Max. P | 0.588884 |
Location | 14,226,217 – 14,226,319 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 92.94 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -21.70 |
Energy contribution | -22.18 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -1.51 |
Structure conservation index | 0.79 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14226217 102 - 22407834 GAGAAACUCGAUUUUGUAUCUACCCCAAAAGUGCGAGUAUCUCAAGUCUGGGGGAAGUCUCGGUCGCAGUUCUUAGUACUACUACUACACAGGGAAAAAUGU ((((.(((((.(((((.........)))))...))))).))))..(.((((((....)))))).)(((.(((((((((....))))).....))))...))) ( -24.50) >DroSec_CAF1 59029 102 - 1 GAGAAACUCGAUUUUGUAUCUACCCCAAAAGUGCGAGUAUCUGAAGUCUGGCUGAAGUCUCGGUCGCAGUUCUUAGUGCUACUACUGCACAGAGAAAAAUGU .(((.(((((.(((((.........)))))...))))).))).......((((((....))))))(((.(((((.((((.......)))).)))))...))) ( -29.10) >DroSim_CAF1 51212 102 - 1 GAGAAACUCGAUUUUGUAUCUACCCCAAAAGUGCGAGUAUCUGAAGUCUGGCUGAAGUCUCGGUCGCAGUUCUUAGUGCUACUACUGCACAGAGAAAAAUGU .(((.(((((.(((((.........)))))...))))).))).......((((((....))))))(((.(((((.((((.......)))).)))))...))) ( -29.10) >DroEre_CAF1 60003 99 - 1 GAGAAACUCGAUUUUGUAUCUACCUCAAAAGUGCGAGUAUCUCGAGUCUGGCUCAAGUCUCGGUUGCAGUUCUUA---CUACUACUGCACAGAGAAAAAUGU ((((.(((((.(((((.........)))))...))))).))))(((.....)))...((((...((((((.....---.....))))))..))))....... ( -29.50) >DroYak_CAF1 48235 102 - 1 GAGAAACUCGAUUUUGUAUCUACCUCAAAAGUGCGAGUACCUCAAGUCUGGCUCAAGUCUCGGUCGCAGUUCUUAACACUACUGCUGCACAGAGAAAAAUGU (((..(((((.(((((.........)))))...)))))..))).......((.....((((.((.(((((..........))))).))...)))).....)) ( -25.10) >consensus GAGAAACUCGAUUUUGUAUCUACCCCAAAAGUGCGAGUAUCUCAAGUCUGGCUGAAGUCUCGGUCGCAGUUCUUAGUACUACUACUGCACAGAGAAAAAUGU ((((.(((((.(((((.........)))))...))))).))))..............((((.((.(((((.............))))))).))))....... (-21.70 = -22.18 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:56 2006