Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,225,304 – 14,225,394 |
Length | 90 |
Max. P | 0.685965 |
Location | 14,225,304 – 14,225,394 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.27 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -16.60 |
Energy contribution | -16.16 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.57 |
Structure conservation index | 0.63 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685965 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14225304 90 + 22407834 UU---ACCAUUCC-GUGCGCUCGA----UGAGUGUCAAGAACUUGUCUUGGCCAUAA-AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAA----CAGUCAAA ..---..((((..-((((.(((.(----((...(((((((.....))))))))))..-.)))......(((....)))))))..))))...----........ ( -21.30) >DroVir_CAF1 86308 95 + 1 UU---GUCUGCUUGCUGGGCUU-U----UGAGUGUCAAGAACUUGUCUUGGCCAUAAAAGAGAAACCGGCAGCAAUGUGCACCAAAUGCACCAUCAAGCCAAA ((---(.(((((.(((((.(((-(----(..(((((((((.....)))))).)))..)))))...))))))))...(((((.....))))).....)).))). ( -30.30) >DroPse_CAF1 70229 101 + 1 CUCCCUCCGUUGC-ACACACUCGAGUGGCGAGUGUCAAGAACUUGUCUUGGCCAUAA-AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAGCAGACAGUCAAA .....((.(((((-(....(((..(((((.((.(.(((....))).))).)))))..-.)))......(((....)))........)))))).))........ ( -24.80) >DroYak_CAF1 47328 90 + 1 UU---ACCAUUUC-GUGCGCUCGA----UGAGUGUCAAGAACUUGUCUUGGCCAUAA-AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAA----CAGUCAAA ..---..(((((.-((((.(((.(----((...(((((((.....))))))))))..-.)))......(((....))))))).)))))...----........ ( -22.90) >DroMoj_CAF1 97353 95 + 1 CU---GUCUGCUCGCUGGGCUU-U----UGAGUGUCAAGAACUAGUCUUGGCCAUAAAAGAGAAACCGGCAGCAAUGUGCACCAAAUGCACCAACAGGCCAAA ((---((.((((.(((((.(((-(----(..(((((((((.....)))))).)))..)))))...)))))))))..(((((.....)))))..))))...... ( -33.20) >DroPer_CAF1 70335 101 + 1 CUCCCUCCGUUGC-ACACACUCGAGUGGCGAGUGUCAAGAACUUGUCUUGGCCAUAA-AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAGCAGACAGUCAAA .....((.(((((-(....(((..(((((.((.(.(((....))).))).)))))..-.)))......(((....)))........)))))).))........ ( -24.80) >consensus CU___ACCAUUUC_AUGCGCUCGA____UGAGUGUCAAGAACUUGUCUUGGCCAUAA_AGAGAAACCGGCAGAAAUGUGCACCAAAUGCAACA__CAGUCAAA ..................(((((.....)))))(((((((.....)))))))...............(((.......((((.....)))).......)))... (-16.60 = -16.16 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:55 2006