Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,224,960 – 14,225,054 |
Length | 94 |
Max. P | 0.977161 |
Location | 14,224,960 – 14,225,054 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.01 |
Mean single sequence MFE | -23.89 |
Consensus MFE | -21.43 |
Energy contribution | -21.82 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.11 |
Mean z-score | -2.06 |
Structure conservation index | 0.90 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14224960 94 + 22407834 GCGCCACUUCCACCCACUUUGACGCCUAUUGGUGUGGUGUAUUGCGAGAGUACGCCUACUUUUUACAUCAUUUAUUAUGUGGGCAAACUAAUAA ((.((((..............(((((....)))))((((((((.....))))))))......................)))))).......... ( -24.20) >DroSec_CAF1 57745 92 + 1 GCGCCACUUCCACCCACUUUGACGCCUAUUGGCGUGGUGUAUUGCG--AGUACGCCUACUUUUUACAUCAUUUAUUAUGUGGGCAAACUAAUAA ((.((((..............(((((....)))))(((((((....--.)))))))......................)))))).......... ( -25.40) >DroSim_CAF1 49938 92 + 1 GCGCCACUUCCACCCACUUUGACGCUCAUUGGCGUGGUGUAUUGCG--AGUACGCCUACUUUUUACAUCAUUUAUUAUGUGGGCAAACUAAUAA ((.((((..............(((((....)))))(((((((....--.)))))))......................)))))).......... ( -22.20) >DroEre_CAF1 58745 92 + 1 GCGUCACUUCCACCCACUUUGACGCCUAUUGGCGUGGUGUAUUGCG--AGUACGCCUACUUUUUACAUCAUUUAUUAUGUGGGCAAAGAAAUAA ......(((...(((((....(((((....)))))(((((((....--.)))))))......................)))))..)))...... ( -25.70) >DroYak_CAF1 46992 92 + 1 AUGCCACUUCCACCCACUUCGACGCCUAUUGGCGUGGUGUAUUGCG--AGUACGCCUACUUUUUACAUCAUUUAUUAUGUGGGCAAACUAAUAA ............(((((....(((((....)))))(((((((....--.)))))))......................)))))........... ( -25.00) >DroAna_CAF1 55250 89 + 1 ACUACACCUCCUCCCACU-UGACGCCUUUUGGCG--AUGAAUUGCG--AGUACGCCUACUUUUUACAUCAUUUAUUAUGUGGGCAAGUCAGUAA (((((.....(((.((.(-(.(((((....))))--.).)).)).)--))...((((((...................))))))..)).))).. ( -20.81) >consensus GCGCCACUUCCACCCACUUUGACGCCUAUUGGCGUGGUGUAUUGCG__AGUACGCCUACUUUUUACAUCAUUUAUUAUGUGGGCAAACUAAUAA ............(((((....(((((....)))))((((((((.....))))))))......................)))))........... (-21.43 = -21.82 + 0.39)
Location | 14,224,960 – 14,225,054 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.01 |
Mean single sequence MFE | -24.32 |
Consensus MFE | -20.53 |
Energy contribution | -21.08 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.58 |
Structure conservation index | 0.84 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14224960 94 - 22407834 UUAUUAGUUUGCCCACAUAAUAAAUGAUGUAAAAAGUAGGCGUACUCUCGCAAUACACCACACCAAUAGGCGUCAAAGUGGGUGGAAGUGGCGC .......((..(((((...................(((.(((......)))..)))...((.((....)).))....)))))..))........ ( -20.40) >DroSec_CAF1 57745 92 - 1 UUAUUAGUUUGCCCACAUAAUAAAUGAUGUAAAAAGUAGGCGUACU--CGCAAUACACCACGCCAAUAGGCGUCAAAGUGGGUGGAAGUGGCGC .......((..(((((...................(((.(((....--)))..)))...(((((....)))))....)))))..))........ ( -25.60) >DroSim_CAF1 49938 92 - 1 UUAUUAGUUUGCCCACAUAAUAAAUGAUGUAAAAAGUAGGCGUACU--CGCAAUACACCACGCCAAUGAGCGUCAAAGUGGGUGGAAGUGGCGC ..........((((((...................(((.(((....--)))..))).((((.(((.((.....))...)))))))..)))).)) ( -22.10) >DroEre_CAF1 58745 92 - 1 UUAUUUCUUUGCCCACAUAAUAAAUGAUGUAAAAAGUAGGCGUACU--CGCAAUACACCACGCCAAUAGGCGUCAAAGUGGGUGGAAGUGACGC ((((((((..((((((...................(((.(((....--)))..)))...(((((....)))))....))))))))))))))... ( -28.30) >DroYak_CAF1 46992 92 - 1 UUAUUAGUUUGCCCACAUAAUAAAUGAUGUAAAAAGUAGGCGUACU--CGCAAUACACCACGCCAAUAGGCGUCGAAGUGGGUGGAAGUGGCAU .......((..(((((...................(((.(((....--)))..))).(.(((((....))))).)..)))))..))........ ( -26.20) >DroAna_CAF1 55250 89 - 1 UUACUGACUUGCCCACAUAAUAAAUGAUGUAAAAAGUAGGCGUACU--CGCAAUUCAU--CGCCAAAAGGCGUCA-AGUGGGAGGAGGUGUAGU ..((((.(((.(((((.........((((..........(((....--)))....)))--)(((....)))....-.)))))..)))...)))) ( -23.34) >consensus UUAUUAGUUUGCCCACAUAAUAAAUGAUGUAAAAAGUAGGCGUACU__CGCAAUACACCACGCCAAUAGGCGUCAAAGUGGGUGGAAGUGGCGC .((((..((..(((((...................(((.(((......)))..)))...(((((....)))))....)))))..)))))).... (-20.53 = -21.08 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:54 2006