Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,224,383 – 14,224,482 |
Length | 99 |
Max. P | 0.960770 |
Location | 14,224,383 – 14,224,482 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.95 |
Mean single sequence MFE | -26.66 |
Consensus MFE | -24.70 |
Energy contribution | -24.46 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.93 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14224383 99 - 22407834 AGAGUAUUGAAAGUGCUACUGCAGCUUGAGAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCAUGUUGCACGUGCUCUGAACACCUUA (((((((.....((((.(((((.((..((.((((............)))).))...((((....)))))).))).)).))))))))))).......... ( -27.20) >DroSec_CAF1 57175 99 - 1 AGAGUAUUGAAAGUGCUACUGCAGCUGGCGAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCGUGUUGCACGUGCUCUGUACACCUUA (((((((.....((((....(((((((...((((............)))).....(((((....))))))))).))).))))))))))).......... ( -27.30) >DroSim_CAF1 49368 99 - 1 AGAGUAUUGAAAGUGCUACUGCAGCUGGCGAGCCUUCCCUUACCUAGGCUAUCUAUCCAUCAAAAUGGGCAGCGUGUUGCACGUGCUCUGUACACCUUA (((((((.....((((....(((((((...(((((..........))))).....(((((....))))))))).))).))))))))))).......... ( -28.40) >DroEre_CAF1 58159 99 - 1 AGAGUAUUAAAAGUGCUACUGCAGCUUAAAAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCAUGUUGCACGUGCUCCGAACACCUUA .((((((.....((((.(((((.((.....((((............))))......((((....)))))).))).)).))))))))))........... ( -24.50) >DroYak_CAF1 46404 99 - 1 AGAGUAUUAAAAGUGCUACUGCAGCUUGAAAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCAUGUUGCACGUGCUCCGAACACCUUA .((((((.....((((.(((((.((..((.((((............)))).))...((((....)))))).))).)).))))))))))........... ( -25.90) >consensus AGAGUAUUGAAAGUGCUACUGCAGCUUGAGAGCCUUCCCUUACCUUGGCUAUCUAUCCAUCAAAAUGGGCAGCAUGUUGCACGUGCUCUGAACACCUUA .((((((.....((((.(((((.((.....((((............))))......((((....)))))).))).)).))))))))))........... (-24.70 = -24.46 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:52 2006