Locus 4952

Sequence ID 2L_DroMel_CAF1
Location 14,220,987 – 14,221,085
Length 98
Max. P 0.875595
window7857

overview

Window 7

Location 14,220,987 – 14,221,085
Length 98
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -19.10
Consensus MFE -6.08
Energy contribution -5.92
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -3.06
Structure conservation index 0.32
SVM decision value 0.89
SVM RNA-class probability 0.875595
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14220987 98 - 22407834
GUAAACAUCGUAAAAUUCGAAUGAAAUCGCGAACAAACAUAUGUACAAAUGUACAAUCUACAAGUGUA------UAUAUGUACGUAUGUGAGUACAAUAAAAUC
(((.(((((((....((((...(....).))))...(((((((((((..((((.....))))..))))------)))))))))).))))...)))......... ( -23.60)
>DroSec_CAF1 53827 104 - 1
GUAAACAUCGUAAAAUUCGAAUGAAAUCGCGAACAAACAUAUGUACAAAUGUACAAUCUACAAGUGUACAUACAUAUAUCUACGUAUGUGAGCACAAUAAAAUC
((..((((((((...((((...(....).))))......((((((((..((((.....))))..))))))))........)))).))))..))........... ( -20.40)
>DroSim_CAF1 46039 104 - 1
GUAAACAUCGUAAAAUUCGAAUGAAAUCGCGAACAAACAUAUGUACAAAUGAACAAUCUACAAGUGUACAUAUAUGUAUGUUCGUAUGUGAGCACAAUAAAAUC
((..((((((.......)))........(((((((.(((((((((((..((.........))..))))))..))))).))))))).)))..))........... ( -23.00)
>DroEre_CAF1 54898 93 - 1
GUAAACAUCGUAAAAUACGAAU------GCGAACAAACAU----ACAAAUGUACAAUCUACAGG-GUACAUACACGUAUAUACAUAUGUGAGCACAAUAAAAUC
.......(((((...))))).(------((..........----....((((((..........-)))))).(((((((....))))))).))).......... ( -15.90)
>DroYak_CAF1 43081 80 - 1
GUAAACAUCGUAAAAUACGAAU------GCGAAGCAACAU----ACAAAUGUACAAUCUACAAG--------------UGUACAUAUGUGAGCACAAUAAAAUC
.......(((((.........)------)))).((....(----(((.(((((((.........--------------))))))).)))).))........... ( -12.60)
>consensus
GUAAACAUCGUAAAAUUCGAAUGAAAUCGCGAACAAACAUAUGUACAAAUGUACAAUCUACAAGUGUACAUA_AUAUAUGUACGUAUGUGAGCACAAUAAAAUC
.......(((.......)))........................(((.(((((((.......................))))))).)))............... ( -6.08 =  -5.92 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:51 2006