| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,217,251 – 14,217,356 |
| Length | 105 |
| Max. P | 0.539475 |
| Location | 14,217,251 – 14,217,356 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 87.08 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -9.71 |
| Energy contribution | -9.71 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.14 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14217251 105 + 22407834 UAAUAAAUUGUGGUACUUAUUCUACCUGAACCACAUAAACAAAGUGGCAGCAACAACCACCAAUUAAUGGUACUGGUACACCCACCCACCACCACCGACCACCGA .........(((((...........(((..((((.........))))))).................((((..((((..........))))..)))))))))... ( -17.80) >DroSec_CAF1 50079 94 + 1 UAAUAAAUUGUGGUACUUAUUCUACCUGAACCACAUAAACAAAGUGGCAGCAACAACCACCGAUUAAUGGUACUGGUACACCCACC-----------ACCACCAA .....(((((((((.....(((.....)))((((.........))))........)))).)))))..((((..((((......)))-----------)..)))). ( -18.90) >DroSim_CAF1 42264 94 + 1 UAAUAAAUUGUGGUACUUAUUCUACCUGAACCACAUAAACAAAGUGGCAGCAACAACCACCGAUUAAUGGUACUGGUACACCCACC-----------ACCACCAA .....(((((((((.....(((.....)))((((.........))))........)))).)))))..((((..((((......)))-----------)..)))). ( -18.90) >DroEre_CAF1 49830 85 + 1 UAAUAAAUUGUGGUACUUAUUCUACCUGAACCACAUAAACAAAGUGCCAGCAACAACCACCGACU------ACUGGUACACCCACC-----------ACCAC--- ........((((((.(...........).))))))........(((((((...............------.))))))).......-----------.....--- ( -15.69) >DroYak_CAF1 39247 82 + 1 UAAUAAAUUGUGGUACUUAUUCUACCUGAACCACAUAAACAAAGUGCCAGCAACAACCACCGAUU------ACUGGUACACCCAC--------------CAC--- ........((((((.(...........).))))))........(((((((...............------.)))))))......--------------...--- ( -15.69) >consensus UAAUAAAUUGUGGUACUUAUUCUACCUGAACCACAUAAACAAAGUGGCAGCAACAACCACCGAUUAAUGGUACUGGUACACCCACC___________ACCACC_A ........((((((.(...........).))))))........(((.(((......................))).))).......................... ( -9.71 = -9.71 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:48 2006