Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,483,828 – 1,483,931 |
Length | 103 |
Max. P | 0.825837 |
Location | 1,483,828 – 1,483,931 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 90.03 |
Mean single sequence MFE | -26.93 |
Consensus MFE | -22.11 |
Energy contribution | -22.78 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.11 |
Mean z-score | -2.40 |
Structure conservation index | 0.82 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1483828 103 + 22407834 GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGGCCGAGAAAAUAGACCGCCGGAAUGGCAAA .(((((((((((((.(((((.((((((......)))))).)).)))))))))...((.(((...........)))))..........)))))))......... ( -30.10) >DroSec_CAF1 101626 103 + 1 GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGCACGAGCAAAUAGACCGCCGGAAUGGCGAA .(((((((((((((.(((((.((((((......)))))).)).)))))))))...((.(((..........))).))..........)))))))......... ( -30.80) >DroSim_CAF1 103924 103 + 1 GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCCAACGAGCUGCAAAGAACAGGCACGAGCAAAUAGACCGCCGGAAUGGCGAA .((((((((.((((((((((.((((((......)))))).)).)))))))).)..((.(((..........))).))..........)))))))......... ( -31.10) >DroEre_CAF1 107459 103 + 1 GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGGCCGGGAAAAUAGACCGACGAAAUGGCGAA ((((((..((((((.(((((.((((((......)))))).)).))))))))).......(((.......))).)))((.........))........)))... ( -23.70) >DroYak_CAF1 104659 103 + 1 GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGGACGAGAAAAUAGACCGACAGAAUGGCGAA .(((.(((((((((.(((((.((((((......)))))).)).)))))))))...((..(((.......)))...))..........))).)))......... ( -22.10) >DroAna_CAF1 102736 91 + 1 CCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGAGGAUUUUUCAAACGAGCUGCGAAGAACGG------------AGAACGUCCAAAUGGGUAA ((((...(((((((((((((.((((((......)))))).)).))))))))....((..((.((.....)).------------))..)))))...))))... ( -23.80) >consensus GCUGGCGGGAAAAAAUCCCAGUAAUUAGACAAGUAAUUAGUGUGGAUUUUUCAAACGAGCUGCAAAGAACAGGGACGAGAAAAUAGACCGCCGGAAUGGCGAA .(((((((((((((.(((((.((((((......)))))).)).))))))))).......(((.......)))...............)))))))......... (-22.11 = -22.78 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:30 2006