Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,209,556 – 14,209,648 |
Length | 92 |
Max. P | 0.901152 |
Location | 14,209,556 – 14,209,648 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.60 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -22.25 |
Energy contribution | -21.64 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.21 |
Mean z-score | -0.85 |
Structure conservation index | 0.96 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14209556 92 + 22407834 UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCACGAG .........((((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))).... ( -23.11) >DroSec_CAF1 42316 91 + 1 UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCGU-CG ..........(((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))..-.. ( -22.51) >DroSim_CAF1 34547 91 + 1 UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCGU-CG ..........(((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))..-.. ( -22.51) >DroEre_CAF1 42074 91 + 1 UGUUCCUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCGU-CG ..........(((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))..-.. ( -22.51) >DroYak_CAF1 31426 91 + 1 UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAAUGCGCCGU-CG ..........(((((((((.....)))))).............(((...((....((((((((....))))))))))....))))))..-.. ( -21.80) >DroAna_CAF1 42224 89 + 1 UUUGCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCGA--AGCAACGCACUGACAGCUGUCAGUGUCUGUAGCGCGCUGU-CG ..........((((.((.........(((.........)))..(((.--.(((..((((((((....)))))))).)))..))))))))-). ( -27.00) >consensus UGUUCUUUUUGGCAUGCAAUAAAUUUGUGUUUUCUGGUCACUUGCAAAAAGAAACGCACUGACAGCUGUCAGUGUCUGUAUCGCGCCGU_CG .........((((.(((((.......(((.........))))))))....((.((((((((((....))))))))..)).))..)))).... (-22.25 = -21.64 + -0.61)
Location | 14,209,556 – 14,209,648 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 94.60 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -19.77 |
Energy contribution | -20.30 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.89 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14209556 92 - 22407834 CUCGUGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA .((.((((((((((..(.(((((((....))))))))((...((((((........))))))..)).....))))))..))))....))... ( -23.30) >DroSec_CAF1 42316 91 - 1 CG-ACGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA ..-..(((((((((..(.(((((((....))))))))((...((((((........))))))..)).....))))))..))).......... ( -22.20) >DroSim_CAF1 34547 91 - 1 CG-ACGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA ..-..(((((((((..(.(((((((....))))))))((...((((((........))))))..)).....))))))..))).......... ( -22.20) >DroEre_CAF1 42074 91 - 1 CG-ACGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAGGAACA ..-.............(.(((((((....))))))))(((((((((.(((.(..(..................)..).))).))))))))). ( -23.67) >DroYak_CAF1 31426 91 - 1 CG-ACGGCGCAUUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA ..-..((((((....((((((((((....)))))))....)))...)))..(((.........))).............))).......... ( -20.50) >DroAna_CAF1 42224 89 - 1 CG-ACAGCGCGCUACAGACACUGACAGCUGUCAGUGCGUUGCU--UCGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGCAAA .(-.(((((((((((((.(.......))))).)))))))))).--..(((((((.........))).......)))).(((......))).. ( -21.21) >consensus CG_ACGGCGCGAUACAGACACUGACAGCUGUCAGUGCGUUUCUUUUUGCAAGUGACCAGAAAACACAAAUUUAUUGCAUGCCAAAAAGAACA .....(((((((((..(.(((((((....))))))))((..(((.....)))..))...............))))))..))).......... (-19.77 = -20.30 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:47 2006