Locus 4947

Sequence ID 2L_DroMel_CAF1
Location 14,194,570 – 14,194,678
Length 108
Max. P 0.525660
window7848

overview

Window 8

Location 14,194,570 – 14,194,678
Length 108
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.32
Mean single sequence MFE -25.24
Consensus MFE -11.72
Energy contribution -11.72
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.46
SVM decision value -0.02
SVM RNA-class probability 0.525660
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14194570 108 + 22407834
UUUUUACUUUCAUUUCUCUUCAUUUUUUUUUUUUUUUGUCUGCAAUUAAGACAAAUUAGUCGUCCGUCGG--CUGACGGAAAUGUCAAGCUCAAUGGGAAGAGUAGGUAA
...((((((......((((((.............(((((((.......)))))))........((((.((--((((((....)))).))).).)))))))))).)))))) ( -27.20)
>DroSec_CAF1 27464 98 + 1
UUUUUAUUUUCCAUUUUUU---UUUUUU-------UUGUCUGCAAUUAAGACAAAUUAGUCGUUCGUCGG--CUGACGGAAAUGUCAAGCUCAAUGGGAAGAAUAGGCAU
......(((((((((....---.....(-------((((((.......)))))))..(((((.....)))--))((((....))))......)))))))))......... ( -21.40)
>DroSim_CAF1 19639 105 + 1
UUUUUACUUUCCAUUUUCU---UUUUUUUUUUUUGUUGGCUGCAAUUAAGACAAAUUAGUCGUCCGUCGG--CUGACGGAAAUGUCAAGCUCAAUGGGAAGAAUAGGCAU
......(((((((((..((---(......(((((((..((((.......(((......)))......)))--)..)))))))....)))...)))))))))......... ( -26.72)
>DroEre_CAF1 27152 87 + 1
UUAUUAUU--------------------UUUUUUUUUGGCUGCAAUUAAGACAAAUUAGUCG-CCGUCGG--CUGACGGAAAUGUCAAGCUCAAUGGGAAGAAUAGGCAU
...(((((--------------------(((((..(((((((((.....(((......))).-(((((..--..)))))...)))..))).)))..)))))))))).... ( -22.90)
>DroYak_CAF1 16226 99 + 1
UUUUUACUUUCCAUUUCCU---------UUUUUUUUUGGCUGCAAUUAAGACAAAUUAGUCGUCCGUCGG--CUGACGGAAAUGUCAAGCUCAAUGGGAAGAAUAGGCAA
......(((((((((....---------.........(((((((.....(((......))).((((((..--..))))))..)))..)))).)))))))))......... ( -23.24)
>DroAna_CAF1 27962 90 + 1
CUACGCUU--------------------CUCGGGCUUCUCUGCAAUUAAGACAAAUUAGUCGAACGGGGGGCCUGACGGAAAUGUCAGGCUCAAUGGGACAGGAAGGUAU
.(((.(((--------------------((...((......))...............(((...((..((((((((((....))))))))))..)).))).)))))))). ( -30.00)
>consensus
UUUUUACUUUCCAUUUUCU_________UUUUUUUUUGGCUGCAAUUAAGACAAAUUAGUCGUCCGUCGG__CUGACGGAAAUGUCAAGCUCAAUGGGAAGAAUAGGCAU
........................................(((......(((......)))..((((.((...(((((....)))))...)).)))).........))). (-11.72 = -11.72 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:43 2006