Locus 4946

Sequence ID 2L_DroMel_CAF1
Location 14,189,377 – 14,189,482
Length 105
Max. P 0.803620
window7847

overview

Window 7

Location 14,189,377 – 14,189,482
Length 105
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 71.73
Mean single sequence MFE -26.57
Consensus MFE -10.15
Energy contribution -10.70
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -2.03
Structure conservation index 0.38
SVM decision value 0.62
SVM RNA-class probability 0.803620
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14189377 105 + 22407834
UGCCGGC-----CGCUUUAAGUCCCUCUUCCGCACACAAUCUUACCA-AAUAC-CGGCAACAUGCACUGAAUUAAUUCCCAUUGCAUGUCGGGCUCGAAUUUGGCCAUACAA
....(((-----((.((..(((((....................((.-.....-.))..(((((((.((..........)).))))))).)))))..))..)))))...... ( -25.10)
>DroVir_CAF1 35438 91 + 1
UGCCGGC-----CGCUUAAAGCCCAC--------AAUA-----ACGAUAAA---AAAUAACAUGCAUUGAAUUAAUUUGCAUUGCAUGUCGCACACAAAUUUGGAUAUAUGA
(((.(((-----........)))...--------....-----........---.....(((((((.((((.....)).)).))))))).)))................... ( -14.00)
>DroPse_CAF1 28436 104 + 1
UGCCGGCUGUGCCGCUUAAAGCCCGUC---CCGGAGCA-----CCGACAACACGGGGCAACAUGCAUCGAAUUAAUUUCCAUUGCAUGUCGGGCACAAAUUUAGGCAUUCAG
(((((((...))).......(((((((---(((.....-----.........)))))).(((((((..(((.....)))...))))))).)))).........))))..... ( -38.44)
>DroSec_CAF1 22163 105 + 1
UGCCGGC-----CGCUUUAAGUCCCUCUUCCCUACACAAUCCUACCA-AAUAC-CGGCAACAUGCACUGAAUUAAUUCCCAUUGCAUGUCGGGCUCGAAUUUGGCCAUACAA
....(((-----((.((..(((((....................((.-.....-.))..(((((((.((..........)).))))))).)))))..))..)))))...... ( -25.10)
>DroMoj_CAF1 37029 90 + 1
CGCCGGC-----CGCUUAAAGCCCAA--------AACA-----ACGAUAAA----AAUAACAUGCAUUGAAUUAAUUUGCAUUGCAUGUCGCACACAAAUUUGGAUAUAUGA
.((.(((-----........)))...--------....-----........----....(((((((.((((.....)).)).))))))).)).................... ( -13.90)
>DroPer_CAF1 27741 104 + 1
UGCCGGCUGUGCCGCUUAAAGCCCGCC---CCGGAGCA-----CCGGCAACACGGGGCAACAUGCAUCGAAUUAAUUUCCAUUGCAUGUCGGGCACAAAUUUAGGCAUUCAA
(((((((...))).......(((((((---(((..((.-----...))....)))))).(((((((..(((.....)))...))))))).)))).........))))..... ( -42.90)
>consensus
UGCCGGC_____CGCUUAAAGCCCAUC___CC__AACA_____ACGA_AAAAC_CGGCAACAUGCAUUGAAUUAAUUUCCAUUGCAUGUCGGGCACAAAUUUGGACAUACAA
.((((((.............)))..................................(.(((((((.((..........)).))))))).)))).................. (-10.15 = -10.70 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:42 2006