Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,171,146 – 14,171,259 |
Length | 113 |
Max. P | 0.567642 |
Location | 14,171,146 – 14,171,259 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.55 |
Mean single sequence MFE | -32.06 |
Consensus MFE | -19.25 |
Energy contribution | -20.18 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.23 |
Mean z-score | -2.10 |
Structure conservation index | 0.60 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14171146 113 - 22407834 GUUACU---GCUGAAG--CCAUUGUUGCUGGGCAUUCUU-UUGUGCGGCCACAAAUUAAUUACUUAUUUGCUUAGC-CGGUUAGCUAUUUUGUUGGCCAUUAAAAUGCCUUUAGGAAAUC ......---.((((((--.((((...((((((((....(-(((((....)))))).............))))))))-.(((((((......))))))).....)))).))))))...... ( -30.13) >DroGri_CAF1 9361 117 - 1 GUUGCUAUCGCUGUAGCGCUGCUGGUGCUGUGCAUUCUUUUUGUGUGGCCACGAAUUAAUUACUUAUUUGCGUAGAGCGCACAACUAUUUUGUAGGCAAUUAAAAUGCCUUUAGUUA--- ((((((..(((.(((((((.((....)).))))......((((((....)))))).........)))..)))...)))).))(((((......(((((.......))))).))))).--- ( -29.30) >DroSim_CAF1 6188 113 - 1 GUUGCU---GCUGAAG--CCAUUGUUGCUGGGCAUUCUU-UUGUGCGGCCACAAAUUAAUUACUUAUUUGCUUAGC-CGGCUAGCUAUUUUGUUGGCCAUUAAAAUGCCUUUAGGAAAUC ......---.((((((--.((((...((((((((....(-(((((....)))))).............))))))))-.(((((((......))))))).....)))).))))))...... ( -32.63) >DroYak_CAF1 9961 113 - 1 UUUGCU---GCUGAGG--CUAUUGUGGCUGGGCAUUCUU-UUGUGCGGCCACAAAUUAAUUACUUAUUUGCUUAGA-CGGCUAGCUAUUUUGUUGGCAAUUAAAAUGCCUUUAGGAAAUC (((.((---(..((((--(..(((((((((.(((.....-.))).)))))))))......................-..((((((......)))))).........)))))))).))).. ( -36.20) >consensus GUUGCU___GCUGAAG__CCAUUGUUGCUGGGCAUUCUU_UUGUGCGGCCACAAAUUAAUUACUUAUUUGCUUAGA_CGGCUAGCUAUUUUGUUGGCAAUUAAAAUGCCUUUAGGAAAUC ..........((((((.....((((.((((.(((.......))).)))).))))...............((.......(((((((......)))))))........))))))))...... (-19.25 = -20.18 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:38 2006