Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,167,256 – 14,167,367 |
Length | 111 |
Max. P | 0.970420 |
Location | 14,167,256 – 14,167,367 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.74 |
Mean single sequence MFE | -40.38 |
Consensus MFE | -27.25 |
Energy contribution | -26.69 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.37 |
Mean z-score | -1.92 |
Structure conservation index | 0.67 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14167256 111 + 22407834 UGAUGCAGAUCCAAACCGGCGGCAGGAGAGGGCAACUGCUGCUGCUGCUGCGGGAACUGU---------GGAGCGGUUUGAAGUUGAUUUUGGGUCGAACGUUGGAACUGCUGAUUGCUG ....((((.(((....(((((((((.((.((....)).)).)))))))))..))).))))---------..((((((((.((((((((.....))).))).)).))))))))........ ( -45.00) >DroGri_CAF1 3311 120 + 1 UGAUGCAAAUCAAGAUUGCUAGCCGACGUGGGCAACUGUUGCUGCUGCUGUGGUGGCUGUGGAUAUUGUGGUGCAGUCUGCAAUUGAUUUUGGGUGGAGCGCUGGAACUGCUGAUUGUUG ((((....))))(((((((..((((..(((..((...((..(..(....)..)..))..))..)))..)))))))))))(((((((..(((.((((...)))).)))...).)))))).. ( -31.90) >DroEre_CAF1 7975 90 + 1 UGAUGCAGAUCCAAGCCGGCGGCGGGAGAGGGCAAAUGCUGCUGCUGCUGCGGGAACUGU---------GGAGCGGUUUGCAGUUGAUUUUGGGUCGAA--------------------- .......((((((((((.(((((((.((..(((....))).)).))))))).))(((((.---------.((....))..)))))...))))))))...--------------------- ( -40.40) >DroYak_CAF1 6248 111 + 1 UGAUGCAGAUCCAAGCCGGCGGCGGGAGAGGGCAACUGCUGCUGCUGCUGCGGGAACUGG---------GGAGCGGUUUGAAGUUGGUUUUGGGUCGAACGUUGGAACUGCUGAUUGCUG ....((((.((((..((.(((((((.((..(((....))).)).))))))).))...)))---------).((((((((.(((((.(........).))).)).))))))))..)))).. ( -44.20) >consensus UGAUGCAGAUCCAAACCGGCGGCGGGAGAGGGCAACUGCUGCUGCUGCUGCGGGAACUGU_________GGAGCGGUUUGAAGUUGAUUUUGGGUCGAACGUUGGAACUGCUGAUUGCUG .......((((((((((.(((((((.((..(((....))).)).))))))).))(((((..............)))))..........))))))))........................ (-27.25 = -26.69 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:37 2006