Locus 4941

Sequence ID 2L_DroMel_CAF1
Location 14,161,734 – 14,161,836
Length 102
Max. P 0.840341
window7841

overview

Window 1

Location 14,161,734 – 14,161,836
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 98.04
Mean single sequence MFE -15.45
Consensus MFE -14.99
Energy contribution -15.32
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.97
SVM decision value 0.75
SVM RNA-class probability 0.840341
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14161734 102 - 22407834
CAACAACCAAUACUUCUCCUACUGCAACUGAAGAAUUAACAACAACUACUGAAGACAAAACAACGACUACGGCCGCUCCCACAACGGCAGUCUCUUCUACAA
............((((.............)))).................(((((.........((((...((((.........)))))))))))))..... ( -12.72)
>DroSec_CAF1 519 102 - 1
CCGCAACCAAUACUUCUCCUACUGCAACUGAAGAAUUAACAACAACUACUGAAGAGAAAACAACGACUACGGCCGCUCCCACAACGGCAGUCUCUUCUACAA
............((((.............)))).................(((((((......((....))((((.........))))..)))))))..... ( -16.82)
>DroSim_CAF1 490 102 - 1
CCGCAACCAAUACUUCUCCUACUGCAACUGAAGAAUUAACAACAACUACUGAAGAGAAAACAACGACUACGGCCGCUCCCACAACGGCAGUCUCUUCUACAA
............((((.............)))).................(((((((......((....))((((.........))))..)))))))..... ( -16.82)
>consensus
CCGCAACCAAUACUUCUCCUACUGCAACUGAAGAAUUAACAACAACUACUGAAGAGAAAACAACGACUACGGCCGCUCCCACAACGGCAGUCUCUUCUACAA
............((((.............)))).................(((((((......((....))((((.........))))..)))))))..... (-14.99 = -15.32 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:36 2006