Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,161,290 – 14,161,395 |
Length | 105 |
Max. P | 0.516737 |
Location | 14,161,290 – 14,161,395 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 85.40 |
Mean single sequence MFE | -17.23 |
Consensus MFE | -11.43 |
Energy contribution | -12.43 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.66 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14161290 105 - 22407834 GCUUCCCCCUUCCACCUCCACCAUUUCCAUUCAUUGGAUCCUUGCCAGAGGCUGAUUCUGCUGUAAUUGCUAUACUACCUAUUCCGCCUCCACCACCGAUCCCAG ...................................(((((..((...(((((.((.......(((.......))).......)).)))))...))..)))))... ( -17.14) >DroSec_CAF1 57 105 - 1 GCUUCCCCCUUCCUCCUCCACCAUUUCCAUUCCUUGGAUCCUUGCCAGAGGCUGAUCCUGCUGUAAUUGCUAUACUACCUAUUCCGCCUCCACCGCCGAUCCCAG ................................((.(((((...((..(((((.((.......(((.......))).......)).)))))....)).))))).)) ( -17.14) >DroSim_CAF1 64 105 - 1 GCUUCCCCCUUCCACCUCCACCAUUUCCAUUCCUUGGAUCCUUGCCAGAGGCUGAUCCUGCUGUAAUUGCUAUACUACCUAUUCCGCCUCCACCGCCGAUCCCAG ................................((.(((((...((..(((((.((.......(((.......))).......)).)))))....)).))))).)) ( -17.14) >DroEre_CAF1 147 90 - 1 ---------------CUCCACCUUUUCCAAUCCUUGGAUCCUUGCCUGUGGCAGAUUCUGCUGCAAUUGCGAUACUACCUAUUCGGCGUCCACCUCCAAUCCCUG ---------------..................(((((....((((((..((((...))))..)).....((..........))))))......)))))...... ( -17.50) >consensus GCUUCCCCCUUCCACCUCCACCAUUUCCAUUCCUUGGAUCCUUGCCAGAGGCUGAUCCUGCUGUAAUUGCUAUACUACCUAUUCCGCCUCCACCGCCGAUCCCAG ...................................(((((.......(((((.((.......(((.......))).......)).))))).......)))))... (-11.43 = -12.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:35 2006