| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,158,386 – 14,158,489 |
| Length | 103 |
| Max. P | 0.616664 |
| Location | 14,158,386 – 14,158,489 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.59 |
| Mean single sequence MFE | -51.18 |
| Consensus MFE | -30.07 |
| Energy contribution | -30.12 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14158386 103 - 22407834 GGGGCUCUGCCGGCGGCCACGG------CUGCAGCUGCUGCGACAAAUGGUGAGGCCGUCGAGGGGGAGCUAAAGUCCGUGGUGUACGGACUGCUGGCCGGCAGACCAG ..((.(((((((((.(((((((------((..((((.((.((((....((.....))))))...)).))))..)).)))))))...(((....)))))))))))))).. ( -52.00) >DroVir_CAF1 419112 109 - 1 GGCGCACGUCCGGCUGCCACAGCCGCUGCCGCAGCAGCUGCCACAAAAGGCGAGGCCGCCGUUGGCGAGCUAAAGUCCGUGGUAUAGGGACUGCUGGAGGGCAGGCCGG (((.......((((((...))))))(((((.((((((((((((.....((((....))))..)))).))))..(((((.((...)).)))))))))...)))))))).. ( -51.40) >DroGri_CAF1 292797 109 - 1 GGCGCUCGACCGGCUGCAACAGCCGCUGCCGCUGCUGCCGCCACAAAAGGCGAGGCCGCCGAGGGCGAGCUGAAGUCCGUGGUAUAGGGGCUGCUGGAGGGCAGGCCGG (((((((..(((((((...)))))((.(((.(((.((((((.......((((....))))..((((........))))))))))))).))).)).)).))))..))).. ( -52.50) >DroEre_CAF1 249962 103 - 1 GGGGCUCUGCCGGCGGCCACGG------CUGCAGCUGCUGCGACAAAAGGGGAGGCCGUCGAUGGGGAACUGAAGUCCGUGGUGUACGGACUGCUGGCAGGGAGACCAG ((..((((((((((..((((((------(.((..((.((........)).))..)).)))).)))........((((((((...))))))))))))))))))...)).. ( -49.70) >DroWil_CAF1 344169 109 - 1 GGCGCACGGCCAGCGGCAACGGCAGCUGCUGCUGCUGCUGCCACAAACGGUGAUGCCGCCGAUGGUGAGCUAAAAUCUGUGGUAUAUGGACUUGUGGCCGGCAAGCCGG (((((.((((((((((((.((((....)))).))))))(((((((..(((((....))))).(((....))).....)))))))..........))))))))..))).. ( -51.30) >DroYak_CAF1 261413 103 - 1 GGGGCUCUGCCGGCGGCCACGG------CUGCAGCUGCCGCGACAAAAGGUGAGGCCGUCGAGGGGGAACUGAAGUCCGUGGUGUACGGACUGCUGGCAGGGAGACCAG ((..((((((((((((((((((------((.(((((.((.((((....((.....)))))).)).))..))).)).))))))........))))))))))))...)).. ( -50.20) >consensus GGCGCUCGGCCGGCGGCCACGG______CUGCAGCUGCUGCCACAAAAGGUGAGGCCGCCGAGGGGGAGCUAAAGUCCGUGGUAUACGGACUGCUGGCAGGCAGACCAG ...(((((.((((((((..((((....))))..)))))).........((((....))))...)))))))...((((((((...)))))))).......((....)).. (-30.07 = -30.12 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:34 2006