Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,157,941 – 14,158,135 |
Length | 194 |
Max. P | 0.999921 |
Location | 14,157,941 – 14,158,058 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.34 |
Mean single sequence MFE | -62.43 |
Consensus MFE | -42.11 |
Energy contribution | -43.23 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.12 |
Mean z-score | -3.30 |
Structure conservation index | 0.67 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14157941 117 + 22407834 CCCAUCACGCACGCAGUUCCCGCUCCUGGAAGUGCGGUGGCCGCUGCUGCAGCCGCGGCUGCGGCCGCAGCGGUGGUCGCUGCCACAAGUUCCAGUGCCGGCGGCACCAGCACCACG ............((.....(((((((((((((((((((((((((((((((.(((((....))))).)))))))))))))))).)))...)))))).)..))))).....))...... ( -62.00) >DroWil_CAF1 343715 117 + 1 CCCAUAACCCACGCAGUUCCAGCUCCUGGCAGUGCAGUGGCCGCGGCAGCAGCUGCUGCGGCUGCUGCAGCAGUUGCAGCUGCCACCAGCUCCGGAGCUGGAGGCACUAGCACUACA ............(((((((((((((((((((((((((..((((((((((...))))))))))..)))).((....)).)))))))........)))))))))...))).))...... ( -64.20) >DroYak_CAF1 260968 117 + 1 CCCAUCACGCACGCGGUUCCCGCUCCUGGAAGUGCGGUGGCUGCUGCAGCAGCCGCGGCUGCGGCCGCAGCUGUAGUGGCUGCCACAAGUUCCACUGCCGGCGGGACCAGCACCACU ............(((((.((((((..(((((.(...(((((.((..(.(((((.(((((....))))).))))).)..)).))))).).))))).....))))))))).))...... ( -61.10) >consensus CCCAUCACGCACGCAGUUCCCGCUCCUGGAAGUGCGGUGGCCGCUGCAGCAGCCGCGGCUGCGGCCGCAGCAGUAGUAGCUGCCACAAGUUCCAGUGCCGGCGGCACCAGCACCACA ...........((((.((((.......)))).))))(((((.((.(((((.((.(((((....))))).)).))))).)).)))))........((((.((.....)).)))).... (-42.11 = -43.23 + 1.12)
Location | 14,157,981 – 14,158,095 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 75.73 |
Mean single sequence MFE | -60.93 |
Consensus MFE | -42.49 |
Energy contribution | -40.74 |
Covariance contribution | -1.75 |
Combinations/Pair | 1.42 |
Mean z-score | -3.11 |
Structure conservation index | 0.70 |
SVM decision value | 4.56 |
SVM RNA-class probability | 0.999921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14157981 114 + 22407834 CCGCUGCUGCAGCCGCGGCUGCGGCCGCAGCGGUGGUCGCUGCCACAAGUUCCAGUGCCGGCGGCACCAGCACCACGGCUGCCGGCAAUGCCACAGCUACCUGCGGCAUGGGCG ((((((((((.(((((....))))).)))))))))).....(((...........((((((((((............))))))))))(((((.(((....))).))))).))). ( -65.50) >DroWil_CAF1 343755 107 + 1 CCGCGGCAGCAGCUGCUGCGGCUGCUGCAGCAGUUGCAGCUGCCACCAGCUCCGGAGCUGGAGGCACUAGCACUACAACGGCUGGCAAUGCCACAGUGACUUGUGGU------- (((((((.(((((((((((((...))))))))))))).)))))..((((((....)))))).))..(((((.(......))))))....(((((((....)))))))------- ( -55.30) >DroYak_CAF1 261008 114 + 1 CUGCUGCAGCAGCCGCGGCUGCGGCCGCAGCUGUAGUGGCUGCCACAAGUUCCACUGCCGGCGGGACCAGCACCACUGCCGCCGGCAAUGCCACUGCUACCUGCGGCAUGGGCG ..(((...(((((....))))).(((((((..((((((((.......((.....))((((((((...(((.....)))))))))))...))))))))...)))))))...))). ( -62.00) >consensus CCGCUGCAGCAGCCGCGGCUGCGGCCGCAGCAGUAGUAGCUGCCACAAGUUCCAGUGCCGGCGGCACCAGCACCACAGCCGCCGGCAAUGCCACAGCUACCUGCGGCAUGGGCG ..((.(((((....))))).)).(((((((..(((((.(((......)))..((.(((((((((..............))))))))).)).....))))))))))))....... (-42.49 = -40.74 + -1.75)
Location | 14,157,981 – 14,158,095 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 75.73 |
Mean single sequence MFE | -62.67 |
Consensus MFE | -45.32 |
Energy contribution | -47.33 |
Covariance contribution | 2.01 |
Combinations/Pair | 1.19 |
Mean z-score | -2.99 |
Structure conservation index | 0.72 |
SVM decision value | 4.48 |
SVM RNA-class probability | 0.999905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14157981 114 - 22407834 CGCCCAUGCCGCAGGUAGCUGUGGCAUUGCCGGCAGCCGUGGUGCUGGUGCCGCCGGCACUGGAACUUGUGGCAGCGACCACCGCUGCGGCCGCAGCCGCGGCUGCAGCAGCGG (((...((((((((((.((((((((...))).)))))...((((((((.....))))))))...))))))))))))).((.(.(((((((((((....))))))))))).).)) ( -68.80) >DroWil_CAF1 343755 107 - 1 -------ACCACAAGUCACUGUGGCAUUGCCAGCCGUUGUAGUGCUAGUGCCUCCAGCUCCGGAGCUGGUGGCAGCUGCAACUGCUGCAGCAGCCGCAGCAGCUGCUGCCGCGG -------...........((((((((.(((.(((.((((((((.....((((.((((((....)))))).)))))))))))).))))))(((((.......))))))))))))) ( -55.20) >DroYak_CAF1 261008 114 - 1 CGCCCAUGCCGCAGGUAGCAGUGGCAUUGCCGGCGGCAGUGGUGCUGGUCCCGCCGGCAGUGGAACUUGUGGCAGCCACUACAGCUGCGGCCGCAGCCGCGGCUGCUGCAGCAG ......((((((((((.((....))((((((((((((((.....)))...)))))))))))...))))))))))((..(..((((((((((....))))))))))..)..)).. ( -64.00) >consensus CGCCCAUGCCGCAGGUAGCUGUGGCAUUGCCGGCAGCAGUGGUGCUGGUGCCGCCGGCACUGGAACUUGUGGCAGCCACAACAGCUGCGGCCGCAGCCGCGGCUGCUGCAGCGG .....(((((((((....)))))))))(((((((((((((((((((((.....)))))..........((.(((((.......))))).))....)))))))))))))..))). (-45.32 = -47.33 + 2.01)
Location | 14,158,018 – 14,158,135 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 83.19 |
Mean single sequence MFE | -61.50 |
Consensus MFE | -43.46 |
Energy contribution | -44.10 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.29 |
Mean z-score | -1.64 |
Structure conservation index | 0.71 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14158018 117 - 22407834 GCGGCUGCCGCGCUGGUCAGUCCGGUGGCAUCCCCCACACCGCCCAUGCCGCAGGUAGCUGUGGCAUUGCCGGCAGCCGUGGUGCUGGUGCCGCCGGCACUGGAACUUGUGGCAGCG ...(((((((((....((((((((((((((((.(((((.(.(((.(((((((((....)))))))))....))).)..)))).)..))))))))))).)))))....))))))))). ( -69.10) >DroSec_CAF1 246778 117 - 1 GCGGCUGCUGCGCUGGUCAGACCGGUAGCAUCCCCAACACCGCCCAUGCCGCAGGUAGCAGUGGCAUUGCCGGCGGCCGUGGUGCUGGUGCCGCCGGCACUGGAACUUGUGGCAGCC ..((((((..((....((((.((((..(((...(((.((((((....(((((.((((((....))..)))).))))).)))))).))))))..))))..))))....))..)))))) ( -61.40) >DroSim_CAF1 243152 117 - 1 GCGGCUGCUGCGCUGGUCAGACCGGUAGCAUCCCCAACACCGCCCAUGCCGCAGGUAGCAGUGGCAUUGCCGGCGGCCGUGGUGCUGGUGCCGCCGGCACUGGAACUUGUGGCAGCC ..((((((..((....((((.((((..(((...(((.((((((....(((((.((((((....))..)))).))))).)))))).))))))..))))..))))....))..)))))) ( -61.40) >DroYak_CAF1 261045 117 - 1 GCGGCUGCCGCGCUGGUCAGUCCGGUGGCAUCCCCCACGCCGCCCAUGCCGCAGGUAGCAGUGGCAUUGCCGGCGGCAGUGGUGCUGGUCCCGCCGGCAGUGGAACUUGUGGCAGCC ..((((((((((....(((.((((((((.(((.(((((((((((.(((((((........)))))))....)))))).)))).)..))).))))))).).)))....)))))))))) ( -66.20) >DroAna_CAF1 241747 117 - 1 GCAGCCGCAACGCUGGUGAGUCCGGCGGCAUCCGCAGCUCCACCCACGCCGCAGGUGACGGUUGCGUUGCCAGCGGUCGUUGUGCUGGUUCCUCCGGCUCCUGAGCUGGUGGCAGCC ((.(((((..((((((.....)))))).......((((((.....(((((((.((..(((....)))..)).)))).)))...(((((.....)))))....))))))))))).)). ( -57.90) >DroPer_CAF1 313577 117 - 1 GCGGCCGCCACAUUUGUGAGGCCGGUGGCAUCCGCGACUCCUGCUCCUCCGCAGGUGACGGUGGCAUUGCCCGCGGACGUGGUGCUCGUUCCGCCGGCACCAGAGCUGGUAGCAGCC .(((((..(((....))).)))))((.((....)).))..(((((((..(...((((.((((((.((.((((((....)))).))..)).)))))).))))...)..)).))))).. ( -53.00) >consensus GCGGCUGCCGCGCUGGUCAGUCCGGUGGCAUCCCCAACACCGCCCAUGCCGCAGGUAGCAGUGGCAUUGCCGGCGGCCGUGGUGCUGGUGCCGCCGGCACUGGAACUUGUGGCAGCC ..((((((((((((((.....)))))....(((..............(((((.(((((........))))).)))))...((((((((.....)))))))))))....))))))))) (-43.46 = -44.10 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:33 2006