Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,136,682 – 14,136,782 |
Length | 100 |
Max. P | 0.899710 |
Location | 14,136,682 – 14,136,782 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -24.76 |
Energy contribution | -24.72 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.85 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14136682 100 + 22407834 GCGGACGGGGUCCCGUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAAUGCAGGAAACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA ..((((((....)))).))..((((((..((((..(.....)..))))..........((....))(((((((((.......)))))))))))))))... ( -30.40) >DroSec_CAF1 225502 100 + 1 GCGGACGGGGUCCCAUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAGUGCAGGAAACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA .....(((.((((((((((((((......((((..(.....)..))))..))))).))((....)).......)))))))...)))((((.....)))). ( -26.80) >DroSim_CAF1 221977 100 + 1 GCGGACGGGGUCCCAUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAGUGCAGGAAACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA .....(((.((((((((((((((......((((..(.....)..))))..))))).))((....)).......)))))))...)))((((.....)))). ( -26.80) >DroEre_CAF1 228348 100 + 1 GCGGACGGGGUCCCUUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAAUGCAGGAUACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA ..((((...))))(((((.((((......((((..(.....)..))))...)))).)))))(((.((((((((((.......)))))))))))))..... ( -28.20) >DroYak_CAF1 239368 100 + 1 GCGGUCGGGGUCCCAUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAGUGCAGGAAACUUGCUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA .(((((...(((((((.............((((..(.....)..))))...((((((.((....)))))))).))))))).)))))((((.....)))). ( -33.70) >consensus GCGGACGGGGUCCCAUGCCUUUCAUGUAAGGGUUGCGAAAAGUGGCUCAAGGAAGUGCAGGAAACUUGGUUCAAUGGGAUAGAUUGAAUCAAUAUGAUUA ......((..(((..(((.((((......((((..(.....)..))))...)))).))))))..))(((((((((.......)))))))))......... (-24.76 = -24.72 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:27 2006