Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,111,089 – 14,111,186 |
Length | 97 |
Max. P | 0.981255 |
Location | 14,111,089 – 14,111,186 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 85.76 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -19.85 |
Energy contribution | -19.98 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.24 |
Mean z-score | -3.03 |
Structure conservation index | 0.73 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14111089 97 + 22407834 G---CUCUCAGCCUUAAAAACUCAUCAUCCAACUAUAUGUUUCUACUCAGCCAUUAGGAAUAGUUCAGUACUGCGGGUUUUUAAGCUUGAGAGUGCGCCU (---(((((((.(((((((((((..............((((((((.........))))))))((........))))))))))))).))))))))...... ( -27.90) >DroSec_CAF1 199887 100 + 1 GCUGCUCUCAGCCUUAAAAACUCAUCAUCCAACUAUAUGUUUCUACUCAGCUAUUAGGAAUAGUUCAGUACUGCGGGUUUUUAAGUUUGAGAGUGCCCCC ((.((((((((.(((((((((((.......(((.....)))..((((.((((((.....)))))).))))....))))))))))).)))))))))).... ( -31.70) >DroSim_CAF1 200695 100 + 1 GCCGCUCUCAGCCUUAAAAACUCAUCAUCCAACUAUAUGUUUCCACUCAGACAUUAGGAAUAGUUCAGUAUUGCGGGUUUUUAAGUUUGAGAGGGCCCCC (((.(((((((.(((((((((((.........(((.((((((......))))))))).....((........))))))))))))).)))))))))).... ( -32.60) >DroYak_CAF1 212201 96 + 1 G---CUCUCGACCUUAAAAACUCAUCAUCCAACUAUAUGAUUCUACUGAGCCAUUGAGAACAGUUCAGUACUGCGAGU-UAAAUGUGUGAUAGUAACCCC (---((.(((..(.....((((((((((........)))))..((((((((...........))))))))....))))-)....)..))).)))...... ( -17.00) >consensus G___CUCUCAGCCUUAAAAACUCAUCAUCCAACUAUAUGUUUCUACUCAGCCAUUAGGAAUAGUUCAGUACUGCGGGUUUUUAAGUUUGAGAGUGCCCCC ....((((((..(((((((((((.................((((............))))((((.....)))).)))))))))))..))))))....... (-19.85 = -19.98 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:20 2006