Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,105,155 – 14,105,275 |
Length | 120 |
Max. P | 0.550017 |
Location | 14,105,155 – 14,105,275 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.56 |
Mean single sequence MFE | -45.79 |
Consensus MFE | -16.28 |
Energy contribution | -17.73 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.40 |
Mean z-score | -2.28 |
Structure conservation index | 0.36 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14105155 120 + 22407834 GGCGCCACCUGAAAAAUCUUCCUAGCUCGGCCAUUUUGUCGGAUAAUCCCGCUGAUGUGGACCUAUUUGCCGCAUCCACCAGCAAGGGAUUCGGUCGAAGGACCUACCGCAAAGUGGCCU (((.......((....))......))).((((((((((.(((..((((((((((((((((.(......))))))))....)))..)))))).((((....))))..))))))))))))). ( -47.62) >DroPse_CAF1 245375 120 + 1 GACGACGUCUGAAGCCUCUUCCCAUUUCCGCAGUUCUCUCGGACAAUCCUGGCGAUGUGGAUCUUUUCGCCGCAUCGACCAGCAAGGGAUUCGGUCGUCGGAUCUACCGCAAGGUGGCCU ..(((((.(((((......((((...((((.((....)))))).....((((((((((((.........)))))))).))))...))))))))).)))))...(((((....)))))... ( -51.10) >DroGri_CAF1 231161 120 + 1 GACGGCGCCUUCAGCCAUUGCCCAACACUGCUGUGCUCUCCGAUAAUCCCGGCGCCGUGGAUCUGUUUGCCGCCUCCAAGAGCAAAGAUUUUGGUCGUCGCAUCUACCGCAAGGUGGCCU .((((((((....((....))....(((....)))...............))))))))((.......(((.((..((((((.......))))))..)).))).(((((....))))))). ( -39.70) >DroWil_CAF1 278109 120 + 1 GCCGACGCUUGCAACCAUUGCCCAACACAGCGAUUCUCUCUGAUAAUCCUGGAGCCGUUGAUUUGUUUGCAGCAUCGGCCAGCAAGGAAUUCGGGCGACGCAACUACCGCAAGGUGGCCU (((.....((((.....((((((....(((.(.....).)))....((((.(.((((.((...((....)).)).)))))....))))....)))))).))))..(((....)))))).. ( -37.00) >DroAna_CAF1 192760 120 + 1 GCCGCUGUCUGAAGCCUCUUCCGACAUCUGCCAUUUUGUCGGAUAAUCCGAGAGAUGUGGACCUUUUUGCUGCAUCCACCAGCAAGGGGUUCGGUCGCCGGACUUACCGCAAAGUGGCAU ...(.((((.((((...)))).)))).)((((((((((.(((.(((((((.(.(((.((((((((((.((((.......))))))))))))))))).))))).)))))))))))))))). ( -49.30) >DroPer_CAF1 252595 120 + 1 GACGACGCCUGAAGCCUCUUCCCAUUUCCGCAGUUCUCUCGGACAAUCCUGGCGAUGUGGAUCUUUUCGCCGCAUCGACCAGCAAGGGAUUCGGUCGUCGGAUCUACCGCAAGGUGGCCU ..(((((.(((((......((((...((((.((....)))))).....((((((((((((.........)))))))).))))...))))))))).)))))...(((((....)))))... ( -50.00) >consensus GACGACGCCUGAAGCCUCUUCCCAACUCCGCAAUUCUCUCGGAUAAUCCUGGCGAUGUGGAUCUUUUUGCCGCAUCCACCAGCAAGGGAUUCGGUCGUCGGAUCUACCGCAAGGUGGCCU ................................................((((((((.(((((((.(((((...........))))))))))))))))))))..(((((....)))))... (-16.28 = -17.73 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:19 2006