Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,480,635 – 1,480,725 |
Length | 90 |
Max. P | 0.764149 |
Location | 1,480,635 – 1,480,725 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 71.56 |
Mean single sequence MFE | -33.23 |
Consensus MFE | -5.32 |
Energy contribution | -6.52 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.19 |
Mean z-score | -2.76 |
Structure conservation index | 0.16 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1480635 90 + 22407834 ----CAGGAGCUCCAGGGGCCAGAAGUCGG-GCAACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG-GGGCAAACCCGUGCUGGUGGCUGCG----- ----..((....)).(.(((((..((((((-(...(((((((((....(((......)))....))))))-)))....)))).)))..))))).).----- ( -35.00) >DroSec_CAF1 98532 90 + 1 ----CAGGAGCUCCAGGAGCCAGAAGUCGG-GCGACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG-GGGAAAGCCUGUGCUGGUGGCUGCG----- ----..((....)).(.(((((..((((((-((..(((((((((....(((......)))....))))))-)))...))))).)))..))))).).----- ( -37.70) >DroSim_CAF1 100809 90 + 1 ----CAGGAGCUCCAGGAGCCAGAAGUCGG-GCGACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG-GGGAAAGCCUGUGCUGGUGGCUGCG----- ----..((....)).(.(((((..((((((-((..(((((((((....(((......)))....))))))-)))...))))).)))..))))).).----- ( -37.70) >DroEre_CAF1 104323 81 + 1 ----CUG--GCGCCAGGAGCCAGAAGUCGG-GCGGCUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG-GAGAAAGCUUG-------GCAAGCG----- ----(((--((.......)))))..(((((-((..(((((((((....(((......)))....))))))-)))...)))))-------)).....----- ( -34.30) >DroAna_CAF1 99529 92 + 1 GAUGAGG--GCGUUGGAUGGGUGGAGUGGGAGGAACUCCCCAAAAAACUGUCUAGUCAUAAAACUUUUUG-G-CCAGGCUUAUGCUGGUGGCUAGG----- (((..((--(((((.....((.(((((.......)))))))....))).)))).)))..........(((-(-((((((....)))..))))))).----- ( -28.80) >DroPer_CAF1 130850 81 + 1 ----GAGGAUGGAUG----------------GAGACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUUGGGGGCAAAGCUUAUGCUGGUGGCUGGGGAGGC ----..((..(((.(----------------....))))))......((.(((((((((..((((((((....))))))))......))))))))).)).. ( -25.90) >consensus ____CAGGAGCGCCAGGAGCCAGAAGUCGG_GCGACUCCCCAAAAAACUGUCUAGUCAUAAAAGUUUGGG_GGGAAAGCCUGUGCUGGUGGCUGCG_____ ...................................(((((((((....(((......)))....)))))).)))..((((.........))))........ ( -5.32 = -6.52 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:27 2006