| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,090,585 – 14,090,691 |
| Length | 106 |
| Max. P | 0.880105 |
| Location | 14,090,585 – 14,090,691 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.12 |
| Mean single sequence MFE | -31.55 |
| Consensus MFE | -20.20 |
| Energy contribution | -19.03 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14090585 106 + 22407834 UGCAUGAUUU--UUGGUGAUGCAAACGAUGAUCGAUCGAACUAUUGUGCGAG---GUCC-ACGACA--AAAGGGCAAGAGUUCGCUCCUUCAGCGCAUUGAGAACAGCGAACCU- .((.((.(((--(..(((.(((......(((..((.((((((.((((.(...---(((.-..))).--...).)))).)))))).))..)))))))))..))))))))......- ( -29.60) >DroVir_CAF1 320683 106 + 1 UGCAUGAUUU-UUUGGUGAUGCAAACAAUGAUCGAUCGAUCUAUUGUCUAAG---GCAC-GAGAC---UCUAGGCAAAAGUUCGCUCUUUCAUUGCAUUGAGAACAGCGAAUGU- (((((.(((.-...))).)))))......((((....))))..(((((((..---((..-..).)---..)))))))..(((((((.(((((......)))))..)))))))..- ( -28.80) >DroGri_CAF1 214285 110 + 1 UGCAUGAUUUUUUUGGUGAUGCAAACAAUGAUCGAUCGAUCUAUUGCCUGAAUACUCUC-UGUAC---UCAAAGCAAAAGUUCGCUCAUUCAUUGCAUUGAGAACAGCGAAUGU- (((((.(((.....))).)))))......((((....))))..((((.(((.(((....-.))).---)))..))))..(((((((..((((......))))...)))))))..- ( -26.80) >DroMoj_CAF1 283697 111 + 1 UGCAUGAUUUUUUUGGUGAUGCAAACAAUGAUCGAUCGAACUAUUGUUUGAU---GCGCUGAGGCACAUUCAAGCAAAGGUUCGCUCCUUUAUUGGAUUGAGAACAGCGAAUGU- (((((.(((.....))).)))))..((((((..((.((((((.(((((((((---(.((....)).)).)))))))).)))))).))..))))))...................- ( -34.10) >DroAna_CAF1 177690 106 + 1 UGCAUGAUUU-UUUGGUGAUGCAAACGAUGAUCGAACGAGCUAUUGUACGAG---AGCC-UAGGCA---GCGGGCAAGAGUUCGUUCCUUCAACGCAUUGAGAACAGCGAUCCU- (((((.(((.-...))).))))).....(((..(((((((((.(((..((..---.((.-...)).---.))..))).)))))))))..))).(((..........))).....- ( -33.50) >DroPer_CAF1 232387 105 + 1 UGCAUGAUUU-UUUGGUGAUGCAAACGAUGAUCGAGCGAAUUAUUGCGUG-G---ACCC-AGGUC----UCAGGCAAGAGCUCGCUCCUUUAUCGCAGUGAGAACAGCGAAACAU (((((.(((.-...))).)))))...(((((..((((((....((((.((-(---((..-..)))----.)).))))....))))))..)))))((.((....)).))....... ( -36.50) >consensus UGCAUGAUUU_UUUGGUGAUGCAAACAAUGAUCGAUCGAACUAUUGUCUGAG___GCCC_AAGAC___UCCAGGCAAAAGUUCGCUCCUUCAUCGCAUUGAGAACAGCGAAUCU_ (((((.(((.....))).)))))..((((((..((.(((.((.((((.((....................)).)))).)).))).))..)))))).................... (-20.20 = -19.03 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:14 2006