Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,087,722 – 14,087,814 |
Length | 92 |
Max. P | 0.848997 |
Location | 14,087,722 – 14,087,814 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 65.52 |
Mean single sequence MFE | -13.90 |
Consensus MFE | -8.72 |
Energy contribution | -8.80 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.44 |
Mean z-score | -1.46 |
Structure conservation index | 0.63 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14087722 92 + 22407834 --UUCAUGCAAAAUACCCAUAAAUCGUGGAAAGCCAGC-CGGAGUUUUCCGCACAUUUUUCGGACCCACUCCAAAAUAACACUUUUCCAGACCCA------ --.....................((.(((((((....)-.(((((..((((.........))))...)))))...........))))))))....------ ( -14.80) >DroGri_CAF1 210725 74 + 1 UGCUCAUGCAAAAGCGCCAUAAAUCGUUGCCAGCCCAG-UUAAGUAUGCCACAUAUUUGGC----------CAGAC----------ACACACACA------ .(((...(((...(((........)))))).)))...(-(((((((((...))))))))))----------.....----------.........------ ( -10.70) >DroSec_CAF1 176180 98 + 1 --UUCAUGCAAAAUACCCAUAAAUCGUGGAAAGCCCGC-CUGAGUUUUCCACACAUUUUUCGGUCCCACUCCAAAAUAACACUUUUCCAGACCCACAAACA --.......................(((((((((....-....))))))))).........((((........................))))........ ( -14.86) >DroSim_CAF1 177050 98 + 1 --UUCAUGCAAAAUACCCAUAAAUCGUGGAAAGCCCGC-CUGAGUUUUCCACACAUUUUUCGGUCCCACUCCAAAAUAACACUUUUCCAGACCCACAAACA --.......................(((((((((....-....))))))))).........((((........................))))........ ( -14.86) >DroMoj_CAF1 279940 75 + 1 UGUUCAUGUCAAAGCUCAAUAAAUUGUUGUCUGCUCGCUUUAAGUACGCCACAUAUUUGGC----------CAAAG----------CCAGACACA------ ......((((..(((.((((.....))))...))).(((((......((((......))))----------.))))----------)..))))..------ ( -14.30) >consensus __UUCAUGCAAAAUACCCAUAAAUCGUGGAAAGCCCGC_CUGAGUUUUCCACACAUUUUUCGG_CCCACUCCAAAAUAACACUUUUCCAGACCCA______ .........................(((((((((.........)))))))))................................................. ( -8.72 = -8.80 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:11 2006