Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,079,672 – 14,079,772 |
Length | 100 |
Max. P | 0.709317 |
Location | 14,079,672 – 14,079,772 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 89.60 |
Mean single sequence MFE | -25.56 |
Consensus MFE | -22.46 |
Energy contribution | -22.10 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.24 |
Mean z-score | -1.37 |
Structure conservation index | 0.88 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14079672 100 + 22407834 AACUAUUUAGUUUGGCUGCGGCUUCAGUUUCCUUGGCUACAGUUGGCCAAUAAUUUUAGGAGAUCGAUAUUGAGACAAAAGGGUAAUAGUUAGUCAAGAA (((((((...((((.((.(((..((.(((((((((((((....))))))........))))))).))..))))).)))).....)))))))......... ( -23.70) >DroSec_CAF1 168296 100 + 1 AACUAUUUAGUUUGGCUGCGGCUUUAGUUUCCUUGGCUACAGUUGGCCAAUAAUUUUGGGAGAUCGAUACCGUGACAAAAGGGUAAUAGUUAGUCAAGAA (((((((...((((..(((((..(..(((((((((((((....))))))........)))))))..)..))))).)))).....)))))))......... ( -27.80) >DroSim_CAF1 169167 100 + 1 AACUAUUUAGUUUGGCUGCGGCUUUAGUUUCCUUGGCUACAGUUGGCCAAUAAUUUAAGGAGAUCGAUACCGUGACAAAAGGGUAAUAGUUAGUCAAGAA (((((((...((((..(((((..(..(((((((((((((....))))))........)))))))..)..))))).)))).....)))))))......... ( -27.80) >DroEre_CAF1 171039 99 + 1 AACUAUUUAGUUUGGCUGCGGCUUAAGUUUCCUUAGCCACAGUUGGCCAAUAAAUUUAGGAGAUCGGUACCGUGACAAAG-GGUAAUAGUUAGCCAAGUA .(((.....(.(..((((.((((.(((....))))))).))))..).)..........((....(..((((.(.....).-))))...)....)).))). ( -23.70) >DroYak_CAF1 178888 100 + 1 AACUAUUUUGCUUUGCGGUGGCUUAAGUUUCCUUGGCCACAGUUGGCCAAUAAUUUUAGAAAAUCGAUACCAUGACAAAGGGGUAAUAGUUAGCCGAGUA (((((((((.(((((..((((((.(((((...(((((((....))))))).))))).))..........))))..))))).)).)))))))......... ( -24.80) >consensus AACUAUUUAGUUUGGCUGCGGCUUAAGUUUCCUUGGCUACAGUUGGCCAAUAAUUUUAGGAGAUCGAUACCGUGACAAAAGGGUAAUAGUUAGUCAAGAA (((((((...((((...((((..(..(((((((((((((....))))))........)))))))..)..))))..)))).....)))))))......... (-22.46 = -22.10 + -0.36)
Location | 14,079,672 – 14,079,772 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 89.60 |
Mean single sequence MFE | -20.89 |
Consensus MFE | -15.54 |
Energy contribution | -15.42 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.83 |
Structure conservation index | 0.74 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14079672 100 - 22407834 UUCUUGACUAACUAUUACCCUUUUGUCUCAAUAUCGAUCUCCUAAAAUUAUUGGCCAACUGUAGCCAAGGAAACUGAAGCCGCAGCCAAACUAAAUAGUU .........(((((((........(((........)))............(((((....((..((..((....))...))..)))))))....))))))) ( -17.10) >DroSec_CAF1 168296 100 - 1 UUCUUGACUAACUAUUACCCUUUUGUCACGGUAUCGAUCUCCCAAAAUUAUUGGCCAACUGUAGCCAAGGAAACUAAAGCCGCAGCCAAACUAAAUAGUU .........(((((((....(((.((..((((...................((((........))))((....))...))))..)).)))...))))))) ( -17.10) >DroSim_CAF1 169167 100 - 1 UUCUUGACUAACUAUUACCCUUUUGUCACGGUAUCGAUCUCCUUAAAUUAUUGGCCAACUGUAGCCAAGGAAACUAAAGCCGCAGCCAAACUAAAUAGUU .........(((((((....(((.((..((((...................((((........))))((....))...))))..)).)))...))))))) ( -17.10) >DroEre_CAF1 171039 99 - 1 UACUUGGCUAACUAUUACC-CUUUGUCACGGUACCGAUCUCCUAAAUUUAUUGGCCAACUGUGGCUAAGGAAACUUAAGCCGCAGCCAAACUAAAUAGUU ...((((((((........-....(((........)))............))))))))(((((((((((....))).))))))))............... ( -26.75) >DroYak_CAF1 178888 100 - 1 UACUCGGCUAACUAUUACCCCUUUGUCAUGGUAUCGAUUUUCUAAAAUUAUUGGCCAACUGUGGCCAAGGAAACUUAAGCCACCGCAAAGCAAAAUAGUU .........(((((((....((((((..((((....................(((((....)))))(((....)))..))))..))))))...))))))) ( -26.40) >consensus UUCUUGACUAACUAUUACCCUUUUGUCACGGUAUCGAUCUCCUAAAAUUAUUGGCCAACUGUAGCCAAGGAAACUAAAGCCGCAGCCAAACUAAAUAGUU .........(((((((....(((.((..((((..................(((((........)))))(....)....))))..)).)))...))))))) (-15.54 = -15.42 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:08 2006