Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,076,321 – 14,076,419 |
Length | 98 |
Max. P | 0.897840 |
Location | 14,076,321 – 14,076,419 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.00 |
Mean single sequence MFE | -30.13 |
Consensus MFE | -24.42 |
Energy contribution | -25.11 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.04 |
Mean z-score | -2.71 |
Structure conservation index | 0.81 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14076321 98 + 22407834 ---------------------GCUUUUUCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGUCCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUACUUUAUACAAAAA ---------------------................((-(((((((((((.((((.((((((.((.........)).)))))).)).)))).)))))))))))................ ( -33.10) >DroSec_CAF1 164998 92 + 1 ---------------------GCUUUUUCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUACUUUAUA------ ---------------------................((-(((((((((((.((((.((((((.(...........).)))))).)).)))).)))))))))))..........------ ( -31.70) >DroSim_CAF1 166117 92 + 1 ---------------------GCUUUUUCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCUUUGCGGCAGGAAAUACUUUAUA------ ---------------------................((-(((((((((...((((.((((((.(...........).)))))).)).))...)))))))))))..........------ ( -28.70) >DroEre_CAF1 167708 92 + 1 ---------------------GCUUUUCCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUACUUUAUA------ ---------------------................((-(((((((((((.((((.((((((.(...........).)))))).)).)))).)))))))))))..........------ ( -31.70) >DroYak_CAF1 175454 92 + 1 ---------------------GCUGUUUCAAUUGCCAUU-UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUAAUUUAUA------ ---------------------................((-(((((((((((.((((.((((((.(...........).)))))).)).)))).)))))))))))..........------ ( -31.70) >DroAna_CAF1 164408 114 + 1 AAACAUCCCAAAAAGUUUGUUCAUUUUCCAAUUGAAAUUUUUUGCCCCACAUGAGUGAGUAACCAACCAAAUCCCACCGCAGCUCGCAUCCGCUGCGGCAGGAAAUACUUUAUA------ ...........(((((...((((.........))))((((((((((.(((....))).....................(((((........))))))))))))))))))))...------ ( -23.90) >consensus _____________________GCUUUUUCAAUUGCCAUU_UUUGCCGCACGUGAGUGAGCUGCCGACCAAAUCCCACCGCAGCUGGCAUCCGUUGCGGCAGGAAAUACUUUAUA______ ....................................(((.(((((((((((.((((.((((((...............)))))).)).)))).))))))))).))).............. (-24.42 = -25.11 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:05 2006