Locus 492

Sequence ID 2L_DroMel_CAF1
Location 1,478,559 – 1,478,652
Length 93
Max. P 0.522046
window786

overview

Window 6

Location 1,478,559 – 1,478,652
Length 93
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 84.85
Mean single sequence MFE -26.42
Consensus MFE -22.90
Energy contribution -21.90
Covariance contribution -1.00
Combinations/Pair 1.33
Mean z-score -1.44
Structure conservation index 0.87
SVM decision value -0.02
SVM RNA-class probability 0.522046
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1478559 93 + 22407834
AACAAUGCCCAGCCUCUGUGUUCCUCUCUCGCUCUGAGGAAGUGAGAUGUGGCAAUAGAUCUAGAGAUGGUACUAGUUCGUAGA-ACAUUAAAU
.((..((((((..(((....((((((.........))))))..))).)).))))...((.((((........)))).))))...-......... ( -22.20)
>DroSec_CAF1 96512 94 + 1
AACAAUGCCCAGCCUCUGUGUUCCUCUCUCGCUCUGAGGGAGUGAGACGGGGCAAUAGAUCUAGAGAUGGUACUAGUUCGUAGAAACAUUUAAU
.....(((...(((.((((.(..(((((((.....)))))))..).)))))))....((.((((........)))).)))))............ ( -28.10)
>DroSim_CAF1 98781 94 + 1
AACAAUGCCCAGCCUCUGUGUUCCUCUCUCGCUCUGAGGGAGUGAGAUGGGGCAAUAGAUCUAGAGAUGGUACUAGUUCGUAGAAACAUUAAAU
...((((.(((..(((((((((((((((((((((.....)))))))).)))).))))....))))).)))(((......)))....)))).... ( -27.40)
>DroEre_CAF1 102336 86 + 1
AACAAUGCCCAGCCUCUGUGUUCCUUUCUCACUCUGAGGGAGUGAAAUGGGGCCGUAGAUCUAGAGAUGGAACUAGAUCGUAGU-AA-------
.....(((...(((((....(((((..(((.....)))..)).)))..)))))....(((((((........))))))))))..-..------- ( -27.90)
>DroYak_CAF1 99171 93 + 1
AACAAAGCCCAGCCUCUGAGCUCCUUUCUCUAACAGAGGGAGUGAGAUGGGGUCAUAGGUCUAGAGAUGGAACUGGAUCGUAAU-AGAUUUAAU
.((....((((..(((...((((((((........))))))))))).))))......(((((((........)))))))))...-......... ( -26.50)
>consensus
AACAAUGCCCAGCCUCUGUGUUCCUCUCUCGCUCUGAGGGAGUGAGAUGGGGCAAUAGAUCUAGAGAUGGUACUAGUUCGUAGA_ACAUUAAAU
.((........(((((....(((((((((((...)))))))).)))..)))))....((.((((........)))).))))............. (-22.90 = -21.90 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:26 2006