Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,073,036 – 14,073,133 |
Length | 97 |
Max. P | 0.827192 |
Location | 14,073,036 – 14,073,133 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 76.65 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -11.96 |
Energy contribution | -11.76 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.35 |
Mean z-score | -1.95 |
Structure conservation index | 0.55 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14073036 97 + 22407834 ----AGGUUUUUUAAUUAAAUUAAAGAAGUAACAUCUUCGCGAUCUUAAGGCACUCGAUUUUUAUUGAGAGCCCUAUGAAUUCAAAAAGAGUAAUGCAUAG ----(((((.((((((...))))))((((......))))..)))))...(((.((((((....)))))).)))(((((.((((.....))))....))))) ( -19.10) >DroSec_CAF1 161731 97 + 1 ----AGGUUUUUUAAUUAAAUUUAAGAAGUAACAUCUUCGCGAUCUUGAGGCUCUCGAUUUUUAUUGAGAGCCCUAUGAAUUCAAAAAGAGUAAUGCAUAG ----...........((((..((..((((......))))..))..))))((((((((((....))))))))))(((((.((((.....))))....))))) ( -24.10) >DroSim_CAF1 162658 97 + 1 ----AGGUUUUUUAAUUAAAUUAAAGAAGUAACAUCUUCGCGAUCUUAAGGCUCUCGAUUUUUAUUGAGAGCCCUAUGAACUCAAAAAGAGUAAUGCAUAG ----(((((.((((((...))))))((((......))))..)))))...((((((((((....))))))))))(((((.((((.....))))....))))) ( -26.30) >DroEre_CAF1 164560 96 + 1 GCGUAAGAAGCGAAAUUAAACUAAGGGAGUAACAAUUUCUCGAACUUAAGGAACUCGAUAUUCAUAGAGAGCC-----GAUUACUAUAGAGUAACAAAUAG ...((((..(.((((((..(((.....)))...)))))).)...)))).((..(((..........)))..))-----(.(((((....))))))...... ( -12.60) >DroYak_CAF1 172052 101 + 1 GCGUAAGAUGUGAAAUUAAAUUAAACGAGUUACUUCUCAUCGAUCUUGAGGAACUCGACUUUUAUUGAGAGUCCUUUAGAUUCGAAUGGAGUAACGAAUAG .(((..(((..........)))..))).((((((((...(((((((.(((((.(((((......)))))..))))).))).))))..))))))))...... ( -27.40) >consensus ____AGGUUUUUUAAUUAAAUUAAAGAAGUAACAUCUUCGCGAUCUUAAGGCACUCGAUUUUUAUUGAGAGCCCUAUGAAUUCAAAAAGAGUAAUGCAUAG .........................((((......))))(((.......(((.((((((....)))))).)))......((((.....))))..))).... (-11.96 = -11.76 + -0.20)
Location | 14,073,036 – 14,073,133 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 76.65 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -5.64 |
Energy contribution | -6.12 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.23 |
Mean z-score | -1.83 |
Structure conservation index | 0.30 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14073036 97 - 22407834 CUAUGCAUUACUCUUUUUGAAUUCAUAGGGCUCUCAAUAAAAAUCGAGUGCCUUAAGAUCGCGAAGAUGUUACUUCUUUAAUUUAAUUAAAAAACCU---- .........(((((((.(((..((.((((((.(((..........))).)))))).))))).))))).))...........................---- ( -17.10) >DroSec_CAF1 161731 97 - 1 CUAUGCAUUACUCUUUUUGAAUUCAUAGGGCUCUCAAUAAAAAUCGAGAGCCUCAAGAUCGCGAAGAUGUUACUUCUUAAAUUUAAUUAAAAAACCU---- .........(((((((.(((..((.(..(((((((..........)))))))..).))))).))))).))...........................---- ( -18.00) >DroSim_CAF1 162658 97 - 1 CUAUGCAUUACUCUUUUUGAGUUCAUAGGGCUCUCAAUAAAAAUCGAGAGCCUUAAGAUCGCGAAGAUGUUACUUCUUUAAUUUAAUUAAAAAACCU---- ....((...((((.....))))((.((((((((((..........)))))))))).))..))((((......)))).....................---- ( -24.30) >DroEre_CAF1 164560 96 - 1 CUAUUUGUUACUCUAUAGUAAUC-----GGCUCUCUAUGAAUAUCGAGUUCCUUAAGUUCGAGAAAUUGUUACUCCCUUAGUUUAAUUUCGCUUCUUACGC .................((((..-----(((............((((..(.....)..))))(((((((..(((.....))).))))))))))..)))).. ( -13.80) >DroYak_CAF1 172052 101 - 1 CUAUUCGUUACUCCAUUCGAAUCUAAAGGACUCUCAAUAAAAGUCGAGUUCCUCAAGAUCGAUGAGAAGUAACUCGUUUAAUUUAAUUUCACAUCUUACGC ......((((((((((.(((.(((..(((((((............))).))))..))))))))).).))))))............................ ( -19.80) >consensus CUAUGCAUUACUCUUUUUGAAUUCAUAGGGCUCUCAAUAAAAAUCGAGUGCCUUAAGAUCGCGAAGAUGUUACUUCUUUAAUUUAAUUAAAAAACCU____ ...........................((((.(((.((....)).))).)))).........((((......))))......................... ( -5.64 = -6.12 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:03 2006