Locus 4918

Sequence ID 2L_DroMel_CAF1
Location 14,070,144 – 14,070,234
Length 90
Max. P 0.518721
window7805

overview

Window 5

Location 14,070,144 – 14,070,234
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 77.94
Mean single sequence MFE -12.70
Consensus MFE -9.76
Energy contribution -9.53
Covariance contribution -0.22
Combinations/Pair 1.09
Mean z-score -0.83
Structure conservation index 0.77
SVM decision value -0.03
SVM RNA-class probability 0.518721
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14070144 90 + 22407834
UUCCAGACGCUAGAAAACUGCGCAUUCAGUGACGCGCUAAAAGUCGCACAUAC---AAACAAAUACACUCACACAAAGGCAAACAGAGUGAAA--
.....(.(((.((....)))))).....(((((.........)))))......---.........(((((...............)))))...-- ( -14.36)
>DroPse_CAF1 196820 69 + 1
UCCCAGACGCUAGAACACUGCGCAUUCAGUGACGCGCUAAAAGUCACACA----------------------ACAAAUGCAAACA--GCGAAA--
.......((((((....))..(((((..(((((.........)))))...----------------------...)))))....)--)))...-- ( -12.60)
>DroEre_CAF1 161719 88 + 1
UUCCAGACGCUAGAAAACUGCGCAUUCAGUGACGCGCUAAAAGUCGCACAUAC---AAACAAAUACACUCACACAAAGGCAAACA--GUGAAA--
.....(.(((.((....)))))).....(((((.........)))))......---............((((.............--))))..-- ( -11.22)
>DroYak_CAF1 169204 88 + 1
UUCCAGACGCUAGAAAACUGCGCAUUCAGUGACGCGCUAAAAGUCGCACAUAC---AAACAAAUACACUCACACGAAGGCAAACA--GUGAAA--
.....(.(((.((....)))))).....(((((.........)))))......---.........((((....(....).....)--)))...-- ( -12.30)
>DroAna_CAF1 156408 87 + 1
UUCUAGACGCUAGAAAACUGCGCAUUCAGUGACGCGCUAAAAGUCGCAUACACAGUAAACAAAUACAG------AAAUUUAAGCA--AUUACACU
((((((...))))))...(((.......(((((.........))))).......(((......)))..------........)))--........ ( -13.10)
>DroPer_CAF1 208941 69 + 1
UCCCAGACGCUAGAACACUGCGCAUUCAGUGACGCGCUAAAAGUCACACA----------------------ACAAAUGCAAACA--GCGAAA--
.......((((((....))..(((((..(((((.........)))))...----------------------...)))))....)--)))...-- ( -12.60)
>consensus
UUCCAGACGCUAGAAAACUGCGCAUUCAGUGACGCGCUAAAAGUCGCACAUAC___AAACAAAUACAC____ACAAAGGCAAACA__GUGAAA__
.....(.(((.((....)))))).....(((((.........)))))................................................ ( -9.76 =  -9.53 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:02 2006