Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,062,735 – 14,062,830 |
Length | 95 |
Max. P | 0.796059 |
Location | 14,062,735 – 14,062,830 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.20 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -19.24 |
Energy contribution | -19.93 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.13 |
Mean z-score | -1.79 |
Structure conservation index | 0.66 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796059 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14062735 95 + 22407834 --GGCAGCAGCAGC------AACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGAGUGGGAUGCG-AGUAUUUUGUGGGCCGG---A------- --(((.((....))------.(((.(((((.(((.(....)....((((.....)))).......(((((....)))))...)))-.))))).)))..)))..---.------- ( -28.20) >DroGri_CAF1 181788 87 + 1 CCGGCAGCAGCAGC---AACUUCAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCAAGGGUGGGC------AUAUUUUC-----------C------- .((((.(((.....---..........)))..))))((.......((((.....)))).......(((((....)))))))------........-----------.------- ( -21.06) >DroSec_CAF1 151624 95 + 1 --GGCAGCAGCAGC------AACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGAGUGGGAUGCG-AGUAUUUUGUGGGCCGG---A------- --(((.((....))------.(((.(((((.(((.(....)....((((.....)))).......(((((....)))))...)))-.))))).)))..)))..---.------- ( -28.20) >DroEre_CAF1 153514 89 + 1 --GGCAGCAGCAGC------AACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGGGUGGGA-------UAUUUUGUGGGCCGG---A------- --.((....)).((------(......)))...(((((.......((((.....))))((((((((((((....)))))..-------..))))))).)))))---.------- ( -27.90) >DroYak_CAF1 161965 95 + 1 --GGCAGCAACAGCAACGGCAACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGGGUGGGA-------UAUUUUGUGGGCCGG---A------- --.(((((....))...(....)....)))...(((((.......((((.....))))((((((((((((....)))))..-------..))))))).)))))---.------- ( -30.30) >DroPer_CAF1 200886 109 + 1 --AGCAACAGAGGC---AGGCCCAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCAUGAGUGGGAUGUGGGAUAUUUUGCGGGCCUACGAAGCUGUUG --..((((((.(..---((((((.(((......(((((((....))))).......(((((....(((((....))))).))))))).....))).)))))).)....)))))) ( -38.00) >consensus __GGCAGCAGCAGC______AACAUAAUGCACGCCGGCAACAUAUUGUCACUUUGACACAUAAAACCACUCACGAGUGGGA_______UAUUUUGUGGGCCGG___A_______ ...(((.....................)))..(((.((((.((((((((.....)))).......(((((....)))))........)))).)))).))).............. (-19.24 = -19.93 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:52 2006