| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,054,917 – 14,055,014 |
| Length | 97 |
| Max. P | 0.982385 |
| Location | 14,054,917 – 14,055,014 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 94.88 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -16.99 |
| Energy contribution | -16.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.36 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14054917 97 + 22407834 UUACCAACAAACCUCUGUGUGUCCACCAACACACACACACAGACCAACAGUU-UAUAUAGAUUUACGUGUAUAUAUAUUUGUUUAGCAGGACCCCCAA ...((........(((((((((............)))))))))..(((((..-((((((.((....)).))))))...))))).....))........ ( -18.90) >DroSec_CAF1 143795 95 + 1 UUACCAACAAACCUCUGUGUGUCCACCAACACACACACAC--ACCAACAGUU-UAUAUAGAUUUACGUGUAUAUAUAUUUGUUUAGCAGGACCCCCAA ...........(((((((((((......))))))......--...(((((..-((((((.((....)).))))))...))))).)).)))........ ( -16.60) >DroYak_CAF1 153576 98 + 1 UUACCAACAAACCUCUGUGUGUCCACCAACACACACCCACACAACAACAAGUUUAUAUAGAUUUACGUGUAUAUAUAUUUGUUUAGCAGGACCCCCAA ...........(((((((((((......))))))...........(((((((.((((((.((....)).)))))).))))))).)).)))........ ( -19.70) >consensus UUACCAACAAACCUCUGUGUGUCCACCAACACACACACACA_ACCAACAGUU_UAUAUAGAUUUACGUGUAUAUAUAUUUGUUUAGCAGGACCCCCAA ...........(((((((((((......))))))...........(((((...((((((.((....)).))))))...))))).)).)))........ (-16.99 = -16.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:50 2006