Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,050,507 – 14,050,597 |
Length | 90 |
Max. P | 0.795166 |
Location | 14,050,507 – 14,050,597 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 78.70 |
Mean single sequence MFE | -19.90 |
Consensus MFE | -12.32 |
Energy contribution | -13.22 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.31 |
Mean z-score | -1.76 |
Structure conservation index | 0.62 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14050507 90 - 22407834 CA-----UCAGUGCGGAAUCUUUGAGGUAACUAUUUUUAUAAUUCGUUUAUGCAUUUGAAAA-GUUUAUUUUCCGUGCUCUAGUUGCCCAAGGCUU ..-----............(((((.((((((((.....((((.....))))((((..(((((-.....))))).))))..)))))))))))))... ( -19.50) >DroSec_CAF1 139362 90 - 1 CA-----UCAGUGCGGAAUCUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAAA-GUUUAUUUUCCGUGCGCUAGUUGCCCAAGGCUU ..-----............(((((.((((((((.....((((.....))))((((..(((((-.....))))).))))..)))))))))))))... ( -20.00) >DroSim_CAF1 142573 90 - 1 CA-----UCAGUGCGGAAUCUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAAA-GUUUAUUUUCCGUGCGCUAGUUGCCCAAGGCUU ..-----............(((((.((((((((.....((((.....))))((((..(((((-.....))))).))))..)))))))))))))... ( -20.00) >DroEre_CAF1 141571 90 - 1 CA-----UCAGUGUGGAAUCUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAGA-GUUUAUUUUCCGUGCGCUAGUUGCCCAAGGCUU ..-----............(((((.((((((((.....((((.....))))((((..(((((-.....))))).))))..)))))))))))))... ( -20.10) >DroWil_CAF1 196788 70 - 1 --------------------CUUGUGGUAACUAUGUAUACUAUACAAGUAUAUAUAUAAAUAUGCAUAGUUUUCAUUUA------CCUCAAGGUUU --------------------((((.(((((..(((...(((((....((((((......)))))))))))...))))))------)).)))).... ( -17.20) >DroYak_CAF1 149179 95 - 1 CGUGGAUUCCGUGUGGAAUUUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAAA-GUUUAUUUUCCGUGUGCUAGUUGCCCAAGGCUU ....((((((....))))))((((.((((((((.....((((.....))))((((..(((((-.....)))))...)))))))))))))))).... ( -22.60) >consensus CA_____UCAGUGCGGAAUCUUUGAGGUAACUAUUUAUAUAAUUCGUUUAUGCAUUUGAAAA_GUUUAUUUUCCGUGCGCUAGUUGCCCAAGGCUU ...................(((((.((((((((.....((((.....))))((((..(((((......))))).))))..)))))))))))))... (-12.32 = -13.22 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:49 2006