Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,477,553 – 1,477,652 |
Length | 99 |
Max. P | 0.569946 |
Location | 1,477,553 – 1,477,652 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 92.38 |
Mean single sequence MFE | -29.72 |
Consensus MFE | -24.82 |
Energy contribution | -25.40 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.11 |
Mean z-score | -1.73 |
Structure conservation index | 0.84 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1477553 99 + 22407834 AGCACAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUCGGGGCUUAAAGACU .....((..(((((((.(((((...((((....))))(((.(..((((((...(((.....)))))))))..).)))......))))))))))))..)) ( -33.60) >DroSec_CAF1 95506 99 + 1 AGCUCAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUCGGGGCUUAAAGACU .....((..(((((((.(((((...((((....))))(((.(..((((((...(((.....)))))))))..).)))......))))))))))))..)) ( -33.60) >DroSim_CAF1 97794 99 + 1 GGCACAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUCGGGGCUUAAAGACU .....((..(((((((.(((((...((((....))))(((.(..((((((...(((.....)))))))))..).)))......))))))))))))..)) ( -33.60) >DroEre_CAF1 101401 89 + 1 ------GGAUUUGG----CCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUGGGGGCUUAAAGACU ------(..(((((----((.....((((....))))(((.(..((((((...(((.....)))))))))..).)))..........))).))))..). ( -22.40) >DroYak_CAF1 98185 99 + 1 AGCACAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUGGGGGCUUAAAGACU .....((..(((((((.(((((...((((....))))(((.(..((((((...(((.....)))))))))..).))).....))))).)))))))..)) ( -31.50) >DroAna_CAF1 95629 97 + 1 ACGACAGGAUUUGGGC--CCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCGUCCCGUUUGAAAAGCAAUCUUAAGUGCUUAAAGAUU ..........((((((--(.((........))..)))))))(..((((((...(((.....)))))))))..).(((((........)))))....... ( -23.60) >consensus AGCACAGGAUUUGGGCACCCGAUACGCCAUUCUUGGCCUAAUUGGAUGGGCAAAUGUUAAGCAUUCCGUUUGAAUAGCAAUCUUCGGGGCUUAAAGACU ......(..(((((((.(((.....((((....))))(((.(..((((((...(((.....)))))))))..).)))........))))))))))..). (-24.82 = -25.40 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:25 2006