Locus 4907

Sequence ID 2L_DroMel_CAF1
Location 14,044,366 – 14,044,459
Length 93
Max. P 0.679184
window7784

overview

Window 4

Location 14,044,366 – 14,044,459
Length 93
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -24.08
Consensus MFE -16.50
Energy contribution -17.03
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -1.51
Structure conservation index 0.69
SVM decision value 0.30
SVM RNA-class probability 0.679184
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14044366 93 - 22407834
UCCAACAAAAAGUGAGCAUUGUUUGUCAGCUUUUGU----GCGUUGGACU--------UGCCAGC-------UGCCAGUUGGCCCGACUAC--UAUUAC-AAAAAAAACA-CACAC
((((((.((((((..(((.....)))..))))))..----..))))))..--------.((((((-------.....))))))........--......-..........-..... ( -22.90)
>DroSec_CAF1 133371 96 - 1
UCCAACAAAAAGUGAGCAUUGUUUGUCAGCUUUUUUGUCAGCGUUGGACU--------UGCCAGC-------AGCCAGUUGGCCCGACUAC--UAUUAC-AAAAAUAUAAAAAA--
(((((((((((((..(((.....)))..))))))).(....)))))))..--------.((((((-------.....))))))........--......-..............-- ( -22.10)
>DroSim_CAF1 136577 95 - 1
UCCAACAAAAAGUGAGCAUUGUUUGUCAGCUUUUUUGUCAGCGUUGGACU--------UGCCAGC-------UGCCAGUUGGCCCGACUAC--UAUUAC-AAAAAUAAAA-AAA--
(((((((((((((..(((.....)))..))))))).(....)))))))..--------.((((((-------.....))))))........--......-..........-...-- ( -22.30)
>DroEre_CAF1 135178 91 - 1
UCCAACAAAAAGUGAGCAUUGUUUGUCAGCUUUUGU----GCGAUGGACU--------UGCCAGCUGCCAGCUGCCAGUUGGCCCGACUAC--UAUUACCAAAAA-----------
..........(((..(((..(((..((.((......----))))..))).--------)))..)))((((((.....))))))........--............----------- ( -23.50)
>DroYak_CAF1 142760 83 - 1
UCCAACAAAAAGUGAGCAUUGUUUGUCAGCUUUUGU----GCGUUGGACU--------UGCCAGC-------UGCCAGUUGGCCCGACUAC--UAUUAC-AAAAA-----------
((((((.((((((..(((.....)))..))))))..----..))))))..--------.((((((-------.....))))))........--......-.....----------- ( -22.90)
>DroAna_CAF1 131605 96 - 1
UCCAACAAAAAGUGAGCAUUGUUGGUCGGCUUUUGU----GCGUUGGGUUGGUCUUGCUGCCAGC-------UGCCAGUUGGCCC-ACUACGCGAUUCA-GGAAAA-----AAU--
(((.((((((..(((.((....)).)))..))))))----(((((((((..(.((.((.......-------.)).)))..))))-)..))))......-)))...-----...-- ( -30.80)
>consensus
UCCAACAAAAAGUGAGCAUUGUUUGUCAGCUUUUGU____GCGUUGGACU________UGCCAGC_______UGCCAGUUGGCCCGACUAC__UAUUAC_AAAAA______AA___
((((((.((((((..(((.....)))..))))))((....))))))))...........((((((............))))))................................. (-16.50 = -17.03 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:43 2006