Locus 4906

Sequence ID 2L_DroMel_CAF1
Location 14,043,703 – 14,043,810
Length 107
Max. P 0.821785
window7783

overview

Window 3

Location 14,043,703 – 14,043,810
Length 107
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 83.02
Mean single sequence MFE -18.52
Consensus MFE -14.48
Energy contribution -14.73
Covariance contribution 0.25
Combinations/Pair 1.19
Mean z-score -1.83
Structure conservation index 0.78
SVM decision value 0.68
SVM RNA-class probability 0.821785
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14043703 107 + 22407834
AUCCAAAGCCUCCAGCCUCCCUUCGUUCCUGCCCACUCACCACUACACUAGCACGGGCACACUCACACAUACACACACACACGCAGACUCGUGCAUAGGACAUAGGC
.......((((....(((...........(((((....................)))))....................((((......))))...)))....)))) ( -16.85)
>DroSec_CAF1 132694 99 + 1
AUCCAAAGCCUCCAGUCUCCCUCCGCUCCUGCCCACUCACCACUACACAAGCACGAGCACAC--------ACACACACGCACGCAGACUCGUGCAUAGGACAUAGGC
.......((((...((((......((((.(((..................))).))))....--------........(((((......)))))...))))..)))) ( -23.37)
>DroSim_CAF1 135895 95 + 1
AUCCAAAGCCUCCAGCCUCCCUCCGCUCCUGCCCACUCACCACUACACUAGCACGAGCACAC--------ACACACA----CGCAGACUCGUGCAUAGGACAUAGGC
..............((((...(((((....))..................((((((((....--------.......----....).)))))))...)))...)))) ( -20.16)
>DroYak_CAF1 142078 97 + 1
AUCCAAAGCCUCCAGCCUGCCU--------GCCCACUCACCACCACACUAGCACGAACACGA--ACACGAACACACACACACAUACACUCGUGCAUAGGACAUAGGC
.......((((....((((..(--------(......))...........((((((......--........................)))))).))))....)))) ( -13.71)
>consensus
AUCCAAAGCCUCCAGCCUCCCUCCGCUCCUGCCCACUCACCACUACACUAGCACGAGCACAC________ACACACACACACGCAGACUCGUGCAUAGGACAUAGGC
.......((((....(((......((....))..................(((((((..............................)))))))..)))....)))) (-14.48 = -14.73 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:42 2006