Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,035,253 – 14,035,422 |
Length | 169 |
Max. P | 0.993121 |
Location | 14,035,253 – 14,035,350 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 94.95 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -28.52 |
Energy contribution | -28.56 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.83 |
Structure conservation index | 0.91 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14035253 97 + 22407834 AAGCGGCAGACAAGUUGGAGUGUGAGUUGCAUUCCACGCUUCCUUUGCAGAUGGCGAUGCAAAUUUGUUGACAGUCGUGUGCAAAGGGCGAAUUGAG ..((.......((((((((((((.....)))))))).))))((((((((.(((((....(((.....)))...))))).))))))))))........ ( -34.70) >DroSec_CAF1 124232 91 + 1 AA------GACAAGUUGGAGAGUGAGCUGCAUUCCACGCUUCCUUUGCAGAUGGCGAUGCAAAUUUGUUGACAGUCGUGUGCAAAGGGCGAAUUGAG ..------..(((..(((((.((.....)).)))))(((..((((((((.(((((....(((.....)))...))))).)))))))))))..))).. ( -29.50) >DroSim_CAF1 127418 97 + 1 AAGUGGCAGACAAGUUGGAGAGUGAGCUGCAUUCCACGCUUCCUUUGCAGAUGGCGAUGCAAAUUUGUUGACAGUCGUGUGCAAAGGGCGAAUUGAG .....((....(((((((((.((.....)).))))).))))((((((((.(((((....(((.....)))...))))).))))))))))........ ( -29.90) >DroEre_CAF1 125868 97 + 1 AAGCGGCAGACAAGUUGGAGAGUGAGCUGCAUUCCACGCUUCCUUUGCAGAUGGCGAUGCAAAUUCGUUGACAGUCGUGUGCAAAGGGCGAAUUGAG ..(((((..((..........))..)))))......(((..((((((((.(((((....(((.....)))...))))).)))))))))))....... ( -31.80) >DroYak_CAF1 133701 97 + 1 AAGCGGCAGACAAGUUGGAGAGUGAGCUGCAUUCCACGCUUCCUUUGCAGAUGCUGAUGCAAAUUCGUUGACAGUCGUGUGCAAAGGGCGAAUUGAG ..(((((..((..........))..)))))......(((..((((((((.((((((..((......))...))).))).)))))))))))....... ( -30.70) >consensus AAGCGGCAGACAAGUUGGAGAGUGAGCUGCAUUCCACGCUUCCUUUGCAGAUGGCGAUGCAAAUUUGUUGACAGUCGUGUGCAAAGGGCGAAUUGAG ..........(((..(((((.((.....)).)))))(((..((((((((.(((((....(((.....)))...))))).)))))))))))..))).. (-28.52 = -28.56 + 0.04)
Location | 14,035,329 – 14,035,422 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 77.62 |
Mean single sequence MFE | -26.92 |
Consensus MFE | -17.55 |
Energy contribution | -19.22 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.17 |
Mean z-score | -1.34 |
Structure conservation index | 0.65 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14035329 93 + 22407834 GUGUGCAAAGGGCGAAUUGAGUGAUAUCUCAGCUUUCUCGGAGGCAACAGCCGUAAUAAAGCCGCCCU-UCCGCCCACUCGGCGCCACGCCUCC--- (((.((.(((((((...((((......))))(((((..(((.(....)..)))....)))))))))))-)..)).)))..((((...))))...--- ( -34.40) >DroSec_CAF1 124302 96 + 1 GUGUGCAAAGGGCGAAUUGAGUGAUAUCUCAGCUUUCUCGGAGGCAACAGCCGUAAUAAAGCCGCCCU-UCCGCCCACUCCGCGCCACGCCUCCUUU (((.((.(((((((...((((......))))(((((..(((.(....)..)))....)))))))))))-)..)).)))...(((...)))....... ( -30.70) >DroSim_CAF1 127494 96 + 1 GUGUGCAAAGGGCGAAUUGAGUGAUAUCUCAGCUUUCUCGGAGGCAACAGCCGUAAUAAAGCCGCCCU-UCCGCCCACUCCGCGCCACGCCUCCUUU (((.((.(((((((...((((......))))(((((..(((.(....)..)))....)))))))))))-)..)).)))...(((...)))....... ( -30.70) >DroEre_CAF1 125944 93 + 1 GUGUGCAAAGGGCGAAUUGAGUGAUAUCUCAGCUUUCUCGGAGGCAACAGCCGUAAUAAAGCCGCCCA-C---UCCACUUCCCUGCACGCCCCCUUU (((((((..(((((...((((......))))(((((..(((.(....)..)))....)))))))))).-.---..........)))))))....... ( -28.54) >DroYak_CAF1 133777 70 + 1 GUGUGCAAAGGGCGAAUUGAGUGAUAUCUCAGCUUUCUCGGAGGCAACAGCCGUAAUAAAGCCGCCC--------CAC------------------- .........(((((...((((......))))(((((..(((.(....)..)))....))))))))))--------...------------------- ( -21.60) >DroAna_CAF1 122549 82 + 1 GUGUGCAAAAGGCGAACGACGUGAUAUCUUAGCUUAUUCGGCACCAACAACAGUAAUAAAGCAGUCGUUUCCGCCCCUUCCA--------------- ..........((((((((((...........(((.....)))..........((......)).))))))..)))).......--------------- ( -15.60) >consensus GUGUGCAAAGGGCGAAUUGAGUGAUAUCUCAGCUUUCUCGGAGGCAACAGCCGUAAUAAAGCCGCCCU_UCCGCCCACUCCGCGCCACGCCUCC___ (((.((..((((((...((((......))))(((((......(((....))).....)))))))))))....)).)))................... (-17.55 = -19.22 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:37 2006