Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,993,482 – 13,993,581 |
Length | 99 |
Max. P | 0.835007 |
Location | 13,993,482 – 13,993,581 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -33.45 |
Consensus MFE | -26.47 |
Energy contribution | -26.47 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.85 |
Structure conservation index | 0.79 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13993482 99 + 22407834 GCCAUCGUCG------------------AUGUC---GCUGUCGUCGCUUUUGUUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA (.((((...)------------------))).)---(((((((((((....))((((.((((((....)))))).))))...))))))))).(..((.((((........)))).))..) ( -31.30) >DroVir_CAF1 140224 108 + 1 AACUCA------G------UCGCAGUCGCAGUCGCAGUCGCCGUCGCAGUUGCUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGCGCAAUUCGUUUCUCGCUCAUGA ...(((------.------..((((..((.(((((((..((....))..))))((((.((((((....)))))).))))......))).(..(((....)))..)))..)).))...))) ( -26.70) >DroPse_CAF1 90821 114 + 1 GCCAUAGCUGUCG------UCUCAGUCGCCGUCGCUGUUGUCGUCGCAGUUGCUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA .....((((((((------((.........((.(((((.......))))).))((((.((((((....)))))).))))...))))))))))(..((.((((........)))).))..) ( -36.90) >DroYak_CAF1 90604 93 + 1 GCCAUCGUCG---------------------------CUGUCGUCGCUUUUGUUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA .........(---------------------------((((((((((....))((((.((((((....)))))).))))...))))))))).(..((.((((........)))).))..) ( -30.10) >DroAna_CAF1 79252 120 + 1 GCCAUCGUCGGCAUCUCAGUCUCAGUCGCCGUCGCUGCUGUCGUCGCAGUUGUUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA .....((.((((..((.......))..)))).))..(((((((((((....))((((.((((((....)))))).))))...))))))))).(..((.((((........)))).))..) ( -38.80) >DroPer_CAF1 97883 114 + 1 GCCAUAGCUGUCG------UCUCAGUCGCCGUCGCUGUUGUCGUCGCAGUUGCUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA .....((((((((------((.........((.(((((.......))))).))((((.((((((....)))))).))))...))))))))))(..((.((((........)))).))..) ( -36.90) >consensus GCCAUAGUCG__G______UCUCAGUCGCCGUCGCUGCUGUCGUCGCAGUUGCUGAUUGAUGCUGUCAAGCAUUUGUCAUUUGAUGACAGUUUUGUGUGCGAUUCGUUUCUCGCUCAUGA .....................................((((((((((....))((((.((((((....)))))).))))...))))))))..(..((.((((........)))).))..) (-26.47 = -26.47 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:29 2006