Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 209,806 – 209,906 |
Length | 100 |
Max. P | 0.540487 |
Location | 209,806 – 209,906 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 79.67 |
Mean single sequence MFE | -28.43 |
Consensus MFE | -15.01 |
Energy contribution | -14.98 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.22 |
Mean z-score | -1.92 |
Structure conservation index | 0.53 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 209806 100 + 22407834 AGCUUUGCUUGAGGAGGCCUGCGAACGCUCCCUCUUCCUUCAGUUCCACUAAUUAAAGUGGAAUAAAAACGAUGGACACCUGGAAA-AAACA--AAGCCAAUA- .((((((...(((((((...((....))..))))))).....((((((((......))))))))......................-...))--)))).....- ( -28.60) >DroPse_CAF1 2033 99 + 1 GGCCCUGCUGGAGGAGGCCUGCGAACGCUCGCUCUUCCUGACAUACCACUAACCUGGGUCGA---AACUGGAAGGAAACCGGAAACCAAGCC--AAGCCAAAAG (((...(((((((((((...((((....)))).))))))(((...(((......))))))..---..((((.......))))...)).))).--..)))..... ( -29.20) >DroSec_CAF1 2099 100 + 1 AGCUUUGCUUGAGGAGGCCUGCGAACGCUCCCUCUUUCUUCAGUUCCACUAAUUCAAGUGGAAUAAAAUCGAUGGACACCUGGAAA-AAACA--AAGCCAAUA- .((((((...(((((((...((....))..))))))).((((((((((((......))))))).....((....))...)))))..-...))--)))).....- ( -27.30) >DroSim_CAF1 1681 100 + 1 AGCUUUGCUUGAGGAGGCCUGCGAACGCUCCCUCUUUCUUCAGUUCCACUAAUUCAAGUGGAAUAAAAUCGAUGGACACCUGGAAA-AAACA--AAGCCAAUA- .((((((...(((((((...((....))..))))))).((((((((((((......))))))).....((....))...)))))..-...))--)))).....- ( -27.30) >DroYak_CAF1 2069 102 + 1 AGUUUUGCUUGAAGAGGCCUGCGAGCGCUCCCUCUUCCUUCAGUUCCACUAAUUCAAAUGAAUUGAAAUCGAUGGACACCUGGAAA-AAGCAAAAAGCCAAAA- ..(((((((((((((((...((....))..))))))).(((((.(((((...(((((.....)))))...).))))...)))))..-))))))))........- ( -28.30) >DroPer_CAF1 2033 99 + 1 GGCCCUGCUGGAGGAGGCCUGCGAGCGCUCGCUCUUCCUGACAUACCACUAACCUGGGUCGA---AACUGGAAGGAAACCGGAAACCAAGCC--AAGCCAAAAG (((...(((((((((((...((((....)))).))))))(((...(((......))))))..---..((((.......))))...)).))).--..)))..... ( -29.90) >consensus AGCUUUGCUUGAGGAGGCCUGCGAACGCUCCCUCUUCCUUCAGUUCCACUAAUUCAAGUGGAAUAAAAUCGAUGGACACCUGGAAA_AAACA__AAGCCAAAA_ ..........(((((((...((....))..)))))))........(((((......)))))............((.....((........)).....))..... (-15.01 = -14.98 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:10 2006