Locus 4898

Sequence ID 2L_DroMel_CAF1
Location 13,986,053 – 13,986,170
Length 117
Max. P 0.558519
window7767

overview

Window 7

Location 13,986,053 – 13,986,170
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 78.63
Mean single sequence MFE -32.34
Consensus MFE -17.18
Energy contribution -18.13
Covariance contribution 0.95
Combinations/Pair 1.38
Mean z-score -1.82
Structure conservation index 0.53
SVM decision value 0.05
SVM RNA-class probability 0.558519
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13986053 117 - 22407834
GCCCUUCAAUGGAUUGAAGCAAUUGAACGAUCUGUUGCUCUCCUACAAUCGAAUCAAGGCACUGCCACAAGAUGCCUUUCAGGGCAUUCCGAAGCUCCAACUUCUGUGCGUUAACUC
(((((......(((((.((((((.((....)).))))))......)))))(((...(((((((......)).))))))))))))).....((((......))))............. ( -28.90)
>DroVir_CAF1 126487 117 - 1
ACCUUUUCAUGGACUCAAGCAGCUGCAUGAUUUGCUGCUCUCCUACAAUCGUAUCAAGACACUGCCGCAGGAUGCCUUUCAGGGCAUACCCAAACUACAAUUGCUGUGAGUAUAUGC
.......((((.(((((((((((.(((((.((((.(((............))).)))).)).))).)).((((((((....)))))).))...........)))).))))).)))). ( -31.70)
>DroPse_CAF1 81621 117 - 1
ACCCUUCCACGGUCUGAAGAAGCUGAACGAUCUGCUUCUCUCGUACAACCGCAUCAGUGCACUCCCACAGGAUGCUUUCCAAGGCAUACCCAAGCUGCAGCUGCUGUAAGCUAAGAU
..((((....(((.(((((((((.((....)).)))))).)))....)))(((((.(((......)))..))))).....))))........((((((((...)))).))))..... ( -28.40)
>DroGri_CAF1 82856 117 - 1
ACCUUUUCAUGGGCUAAAGCAGCUGCAUGAUCUGUUGCUCUCCUACAAUCGCAUCAGGUCCUUGCCACAGGAUGCCUUUCAAGGAAUACCCAAACUGCAACUGCUGUAAGUGAACCG
.....(((((..((...(((((.((((...((((.(((............))).))))((((((....(((...)))..))))))..........)))).)))))))..)))))... ( -29.50)
>DroWil_CAF1 103165 117 - 1
ACCCUUUCAUGGGCUAAAGCAACUGCACGAUCUGUUGCUCUCCUAUAAUCGCAUCAAGGCUAUUCCUCAAGAUGCCUUUCAGGGCAUACCCAAAUUGCAGUUGCUGUAAGUAAUGAA
.....(((((..(((..((((((((((......((((((((.........(((((.(((.....)))...))))).....)))))).))......))))))))))...))).))))) ( -34.14)
>DroMoj_CAF1 105334 117 - 1
ACCUUUCCAUGGACUUAAGCAGCUGCACGACCUGCUGCUCUCCUAUAAUCGCAUCAAGACACUGCCGCAGGAUGCCUUUCAGGGCAUACCCAAGCUGCAGCUGCUGUGAGUAUACUA
.((.......))((((((((((((((((..(((((.((.........................)).)))))((((((....))))))......).)))))))))).)))))...... ( -41.41)
>consensus
ACCCUUCCAUGGACUAAAGCAGCUGCACGAUCUGCUGCUCUCCUACAAUCGCAUCAAGGCACUGCCACAGGAUGCCUUUCAGGGCAUACCCAAACUGCAACUGCUGUAAGUAAACAA
.((.......))(((..((((((((.....(((((.((.........................)).)))))((((((....))))))..........))))))))...)))...... (-17.18 = -18.13 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:27 2006