Locus 4897

Sequence ID 2L_DroMel_CAF1
Location 13,985,926 – 13,986,030
Length 104
Max. P 0.887774
window7766

overview

Window 6

Location 13,985,926 – 13,986,030
Length 104
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 84.29
Mean single sequence MFE -31.04
Consensus MFE -25.78
Energy contribution -25.28
Covariance contribution -0.50
Combinations/Pair 1.36
Mean z-score -2.35
Structure conservation index 0.83
SVM decision value 0.95
SVM RNA-class probability 0.887774
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13985926 104 - 22407834
UAUAGUA---UUA--UUCGUAUUAUUCACAGUGACCUGGAGGGCAACGAGAUCUCGUACAUACACAAGGAAGCCUUUUCCGGUUUCACAGCCCUCGAGGAUCUCAAUUU
.((((((---(..--...))))))).....(.(((((.((((((.((((....))))...........((((((......))))))...)))))).))).)).)..... ( -33.10)
>DroSec_CAF1 73496 104 - 1
UAAAGAA---UUC--UUCGUUUUAUUCACAGUGACCUGGAGGGCAACGAGAUCUCGUACAUACACAAGGAAGCCUUCUCCGGUUUCACAGCCCUCGAGGAUCUCAACUU
....((.---.((--(((..........(((....)))((((((.((((....))))...........((((((......))))))...)))))))))))..))..... ( -33.10)
>DroSim_CAF1 77248 109 - 1
UAAAGAAAAAUUCGUUUCGUUUUAUUCACAGUGACCUGGAGGGCAACGAGAUCUCGUACAUACACAAGGAAGCCUUCUCCGGUUUCACAGCCCUCGAGGAUCUCAACUU
....(((.((..((...))..)).)))...(.(((((.((((((.((((....))))...........((((((......))))))...)))))).))).)).)..... ( -32.80)
>DroEre_CAF1 76224 104 - 1
UGUAGUG---UUA--UUCGUUUUAUUCACAGGGACCUGGAGGGCAACGAGAUCUCGUACAUACACAAGGAGGCCUUCUCCGGCUUCACAGCCCUCGAAGAUCUCAAUUU
....(((---...--...........))).((((.((.((((((.((((....))))...........((((((......))))))...))))))..)).))))..... ( -32.54)
>DroWil_CAF1 103041 102 - 1
UGAUCUA---UUG--UUGCUUUUA--AAUAGGGAUCUGGAGGGCAAUGAAAUCGCUUUCAUUCACAAAGAAGCCUUUGCCAGUUUUACGGCUUUGGAGGAUCUUAAUUU
.(((((.---(((--..(((...(--(((.((((....((((((.........))))))..)).(((((....))))))).))))...)))..))).)))))....... ( -21.80)
>DroYak_CAF1 82878 104 - 1
UGUAGUA---UUA--UUCGUUUCAUUCACAGGGACCUGGAGGGCAAUGAGAUCUCGUACAUACACAAGGAGGCCUUCUCCGGCUUCACAGCCCUCGAGGAUCUUAAUUU
.......---...--...............(((((((.((((((.((((....))))...........((((((......))))))...)))))).))).))))..... ( -32.90)
>consensus
UAAAGUA___UUA__UUCGUUUUAUUCACAGGGACCUGGAGGGCAACGAGAUCUCGUACAUACACAAGGAAGCCUUCUCCGGUUUCACAGCCCUCGAGGAUCUCAAUUU
..............................(.(((((.((((((.((((....))))...........((((((......))))))...)))))).))).)).)..... (-25.78 = -25.28 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:26 2006