Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,984,173 – 13,984,289 |
Length | 116 |
Max. P | 0.815638 |
Location | 13,984,173 – 13,984,289 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -53.85 |
Consensus MFE | -28.11 |
Energy contribution | -27.83 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.31 |
Mean z-score | -2.07 |
Structure conservation index | 0.52 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13984173 116 + 22407834 CAGUAUAGGCUCUCUGGCGUCGCUGUUGCGGUUGCCGUCGCUGUUUGCGACGCCUUCGGUUCUCCCCGCAGCAGAAUGUUCUCAAUCUCUGCCACAUGCUCGGUGUCUGCUCCAUU ((((((.(((....((((....(((((((((..(.((((((.....)))))).)...((....)))))))))))..((....))......))))...)))..))).)))....... ( -36.30) >DroPse_CAF1 79058 116 + 1 CGGUGUAGGCCCUGGGGCGUCGCUGCUGCGGCUGUCGGCGUUGCUUACGACGGCGGCGCCGGUCGCCACAGCAGAAUGUUCUCAGGCGCUGCCAGAGACCCGGCGCCUGCUCCAUC .((.((((((.(((((((((..((((((.(((..(((((((((((......)))))))))))..))).)))))).))))((((.(((...))).))))))))).)))))).))... ( -70.40) >DroYak_CAF1 81117 116 + 1 CAGUAUAGGCUCUCUGACGUCGCUGCUGCGGUUGCCGACGCUGUUUGCGGCGCCUUCGACUCUCCCCGCAGCAGAAGGUUCUCAGUCUCUGCCACAAGCUCGGCGCCUGCUCCAUU .....(((((...((((.....(((((((((..(.((((((((....)))))...))).).....))))))))).......)))).....(((........))))))))....... ( -39.80) >DroMoj_CAF1 102432 113 + 1 CGGUGUAGGCCCUCUGACGUCGCUGCUGCGGCUGCCGUCGCUGCUUGCGUCGCUGCCG---CUGGCCACAGCAGAGACGCUUCAAGCGCUGCCACAGCGUCGGCGUCUGCUCUAUC .((.((((((((..(((((((.((((((.((((((.((.((.((....)).)).)).)---).)))).)))))).))))..))).((((((...)))))).)).)))))).))... ( -51.20) >DroAna_CAF1 70403 116 + 1 CCGUGUAGGCUCUUUGGCGCCGCUGCUGUGGCUGGCGGCGCUGCUUGCGUCGUCGACGUUUUUCGCCGCAGCAGAAGGCUCUGAGUCGCUGCCACAGACUGGGCGUUUGCUCCAUC ..(((..(((..((..(.(((.((((((((((.((((((((.....))))))))((......))))))))))))..))).)..))..)))..)))....(((((....)).))).. ( -55.00) >DroPer_CAF1 87995 116 + 1 CGGUGUAGGCCCUGGGGCGUCGCUGCUGCGGCUGUCGGCGUUGCUUACGACGGCGGCGCCGGUCGCCACAGCAGAAUGUUCUCAGGCGCUGCCAGAGACCCGGCGCCUGCUCCAUC .((.((((((.(((((((((..((((((.(((..(((((((((((......)))))))))))..))).)))))).))))((((.(((...))).))))))))).)))))).))... ( -70.40) >consensus CGGUGUAGGCCCUCUGGCGUCGCUGCUGCGGCUGCCGGCGCUGCUUGCGACGCCGGCGCCUCUCGCCACAGCAGAAUGUUCUCAGGCGCUGCCACAGACUCGGCGCCUGCUCCAUC ..(.((((((.....(((....((((((.(((((.((.(((.....))).)).)).........))).))))))...)))..........(((........))))))))).).... (-28.11 = -27.83 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:25 2006