Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,958,499 – 13,958,596 |
Length | 97 |
Max. P | 0.924897 |
Location | 13,958,499 – 13,958,596 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.02 |
Mean single sequence MFE | -39.68 |
Consensus MFE | -25.01 |
Energy contribution | -26.47 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.30 |
Mean z-score | -2.84 |
Structure conservation index | 0.63 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13958499 97 + 22407834 CUGGCCAAUCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC-CAUGGAUUGGAUUUAGCGGC-AGCUGUGCUUAACUGCAGGAGCUG ....((((((((-...(((((((((.((.((((......)))).))))))))))-).)))))))).........(-((((.(((......))).).)))) ( -40.20) >DroSec_CAF1 46268 97 + 1 CUGGCCAAUCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC-CAUGGAUUGGCUUUAGCGGC-AGCUGUGCUUUACUGCAGGAGCUG ..((((((((((-...(((((((((.((.((((......)))).))))))))))-).)))))))))).......(-((((.(((......))).).)))) ( -44.20) >DroSim_CAF1 46388 97 + 1 CUGGCCAAUCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC-CAUGGAUUGGCUUUAGCGGC-AGCUGUGCUUUACUGCAGGAGCCU ..((((((((((-...(((((((((.((.((((......)))).))))))))))-).)))))))))).....(((-..((((........))))..))). ( -44.60) >DroEre_CAF1 47335 97 + 1 CUGGCUAAGCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC-CGUGGAUUGGUUUUUGCGGC-AGCUGUGCUGGACUGCAGGAGUUG ...(((((....-.(((((((((((.((.((((......)))).))))))))))-)))...)))))(((((((((-(((...))))..)))))))).... ( -40.40) >DroYak_CAF1 47660 96 + 1 CUGGCCAAUCUA-AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGC-U-CGUGGAUUGGCUUUUGAGGC-AGCUGCGCUGUGCAGCAGGAGGUG ..((((((((((-....((((((((.((.((((......)))).))))))))-)-).))))))))))........-.(((((.....)))))........ ( -38.20) >DroPer_CAF1 54787 93 + 1 CUCGUGAAACUGCUGCAGAGUUUCCUUUCCAUCUGAUCUGCAGAACGGAAGUGCAGAUUGAGUGGCUAU--CGGCUAUCGGCUCUCGGCU----GAGCC- ...(.((((((.......)))))))...((((..(((((((...((....)))))))))..))))....--.(((..(((((.....)))----)))))- ( -30.50) >consensus CUGGCCAAUCUA_AACGGGGUUUCCUGUCCUUCUCGUAUGGAGAACGGAAGCCC_CAUGGAUUGGCUUUAGCGGC_AGCUGUGCUUUACUGCAGGAGCUG ...(((((((((.....((((((((.((.((((......)))).))))))))))...)))))))))......(((...((((........))))..))). (-25.01 = -26.47 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:14 2006