Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,957,056 – 13,957,146 |
Length | 90 |
Max. P | 0.825639 |
Location | 13,957,056 – 13,957,146 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -19.45 |
Consensus MFE | -15.80 |
Energy contribution | -16.43 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.81 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13957056 90 + 22407834 AAGAAAAGCGCAAGUCGAUUUGAAAUGAAAUCAAAACAAAAGUGACUACGAAAACAACUGGCGUAGUCGCGUUUUUGCACCGCAAUGACA .......((....)).(((((......))))).........(((((((((..(.....)..)))))))))(((.((((...)))).))). ( -22.70) >DroSec_CAF1 44877 85 + 1 AAGAAAAGCGCAAGUCGAUUCGA-----AAUCAAAACAAAAGCGACUACGAAAACAAGUGGCGUAGUCGGGUUUUUGCCCCGCAAUGACA .............((((((....-----.))).........(((((((((...(....)..)))))))((((....)))).))...))). ( -21.60) >DroSim_CAF1 44994 85 + 1 AAGAAAAGCGCAAGUCGAUUCGA-----AAUCAAAACAAAAGUGACUACGAAAACAAGUGGCGUAGUCGGGUUUUUGCCCCGCAAUGACA .............(((.(((((.-----...............(((((((...(....)..)))))))((((....)))))).)))))). ( -19.40) >DroEre_CAF1 45897 84 + 1 AAGAAAAGCGCAAGUCGAUUCGA-----AAUCAAAACAAAAGUGACAACGAAAACAACCGACGUAGUCGGGUUUUUGCCCC-CAAUGACA ..(((..((....))...)))..-----..(((..........(((.(((...........))).)))((((....)))).-...))).. ( -14.10) >consensus AAGAAAAGCGCAAGUCGAUUCGA_____AAUCAAAACAAAAGUGACUACGAAAACAACUGGCGUAGUCGGGUUUUUGCCCCGCAAUGACA .............(((((((........)))).........(((((((((...........)))))))((((....)))).))...))). (-15.80 = -16.43 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:13 2006