Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,448,375 – 1,448,481 |
Length | 106 |
Max. P | 0.906130 |
Location | 1,448,375 – 1,448,481 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 85.78 |
Mean single sequence MFE | -29.74 |
Consensus MFE | -24.00 |
Energy contribution | -23.68 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.29 |
Mean z-score | -1.99 |
Structure conservation index | 0.81 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1448375 106 + 22407834 CGAGG--GAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUU-GUUAUUUUUUUUACUCUCUGCUGGGCAAACGAACUCG .(((.--.(((((((((.((((((((..((..(((.(((((......))))))))..)).....)))))))-).)))))))))..)))......(((........))). ( -30.60) >DroSec_CAF1 66365 107 + 1 CGAGG--GAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUUUUUUAUUUUUUGUACUCUCUGCUGGGCAAACGAACUCG .((((--(.((((((((..(((((((..((..(((.(((((......))))))))..)).....)))))))...))))))))...)))))....(((........))). ( -28.50) >DroEre_CAF1 68805 103 + 1 CCAGC--CAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUU-UUUAUUU---UUACUCUCUGCCGGGCAAACGAACCCG ...((--(.((((((((..(((((((..((..(((.(((((......))))))))..)).....)))))))-.......---.))))))))....)))........... ( -31.50) >DroYak_CAF1 67831 103 + 1 CGAGG--CAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUU-UUUAUUU---UCACUCUCCGCUGGGCAAACGAACCCG ...((--(..(((((((..(((((((..((..(((.(((((......))))))))..)).....)))))))-.......---.))))))).)))(((........))). ( -31.90) >DroAna_CAF1 66563 96 + 1 CAGGGUAGAAGAGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAAC--UCAGCCAACUUAUCAGU-----------UUUUUUACUCUCUGCUGGGCAAACGAAGUUA ..(..(((.((((((((..(((.(((..((((..((((((((......--)))))))).)))).)))-----------)))..)))))))).)))..)........... ( -26.20) >consensus CGAGG__GAAGGGAGUGUUAAAUGCUAUGUAAACUUGGCUGGAAAAACAGCCAGUCAACUUAUCAGCGUUU_UUUAUUUUUUUUACUCUCUGCUGGGCAAACGAACUCG .........((((((((..(((((((..((((..((((((((........)))))))).)))).)))))))............))))))))..((((........)))) (-24.00 = -23.68 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:23 2006