Locus 4889

Sequence ID 2L_DroMel_CAF1
Location 13,956,716 – 13,956,820
Length 104
Max. P 0.817929
window7751

overview

Window 1

Location 13,956,716 – 13,956,820
Length 104
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 79.56
Mean single sequence MFE -18.60
Consensus MFE -12.80
Energy contribution -12.68
Covariance contribution -0.13
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.69
SVM decision value 0.67
SVM RNA-class probability 0.817929
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13956716 104 - 22407834
GUUAAAUUUACGACUA-------------AAAAAAACAAGUACCAACAAACUAUAUCUUUGUUUAAUGGUACUAACUAGACUACUUAAUAUUACAAGCGGAUAUAGCACCUGCUCAA
................-------------.........(((((((..((((.........))))..)))))))......................(((((.........)))))... ( -14.50)
>DroSec_CAF1 44556 117 - 1
GUUAAAUUUACGACUAUGUUAAAUAAGGCAACAAAACAAUUACCAACAAACUAUAUCUUUGUUUAAUGGUACUAACUAGACUACUUAAUAUUACAAGCGGAUAUAGCACCUGUCCAC
((((.(((..(....(((((((....(....)........(((((..((((.........))))..))))).............))))))).....)..))).)))).......... ( -15.40)
>DroEre_CAF1 45544 108 - 1
GUCUAAUUUACCACUU---------AGGCAACUAAACGAGUACCAACAAACUAUAACUUUGUUUAAUGGUACUAACUAGACUAUAACAUUUUACAAGCGGAUAUAGUACCUGCACAU
(((((.........((---------((....))))...(((((((..((((.........))))..)))))))...)))))...............((((.........)))).... ( -23.50)
>DroYak_CAF1 45876 106 - 1
GUCUAAGUAACAACU----------AAACCACAAAACGAGUGCCAACAAACUAUAUCUAUGUUUAUUGGUACUAACUAGACUAUU-UAUAUUACAAGCGGAUAGAGUAGCUGCACAU
((((((((....)))----------.............((((((((.((((.........)))).))))))))...)))))....-..........((((.........)))).... ( -21.00)
>consensus
GUCAAAUUUACGACUA_________AGGCAACAAAACAAGUACCAACAAACUAUAUCUUUGUUUAAUGGUACUAACUAGACUACUUAAUAUUACAAGCGGAUAUAGCACCUGCACAU
......................................(((((((..((((.........))))..))))))).......................((((.........)))).... (-12.80 = -12.68 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:12 2006